Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0348 and DVU0349 are separated by 19 nucleotides DVU0349 and spsF are separated by 36 nucleotides spsF and DVU0351 overlap by 4 nucleotides
DVU0348: DVU0348 - hypothetical protein (TIGR), at 394,354 to 396,078
DVU0348
DVU0349: DVU0349 - NeuB family protein (TIGR), at 396,098 to 397,156
DVU0349
DVU0350: spsF - spore coat polysaccharide biosynthesis protein spsF (TIGR), at 397,193 to 397,876
spsF
DVU0351: DVU0351 - cytidine 5monophosphate N-acetylneuraminic acid synthetase, putative/polysaccharide biosynthesis protein (TIGR), at 397,873 to 399,507
DVU0351
Position (kb) 396
397
398 Strain fitness (log2 ratio) -2
-1
0
1
2 at 395.185 kb on - strand, within DVU0348 at 395.225 kb on + strand, within DVU0348 at 395.286 kb on - strand, within DVU0348 at 395.340 kb on - strand, within DVU0348 at 395.381 kb on + strand, within DVU0348 at 395.413 kb on - strand, within DVU0348 at 395.481 kb on - strand, within DVU0348 at 395.481 kb on - strand, within DVU0348 at 395.573 kb on - strand, within DVU0348 at 395.580 kb on + strand, within DVU0348 at 395.587 kb on - strand, within DVU0348 at 395.771 kb on + strand, within DVU0348 at 395.842 kb on + strand, within DVU0348 at 395.842 kb on + strand, within DVU0348 at 395.985 kb on - strand at 396.047 kb on + strand at 396.055 kb on - strand at 396.169 kb on + strand at 396.188 kb on + strand at 396.287 kb on - strand, within DVU0349 at 396.303 kb on - strand, within DVU0349 at 396.313 kb on + strand, within DVU0349 at 396.350 kb on + strand, within DVU0349 at 396.378 kb on - strand, within DVU0349 at 396.380 kb on + strand, within DVU0349 at 396.389 kb on - strand, within DVU0349 at 396.393 kb on + strand, within DVU0349 at 396.428 kb on - strand, within DVU0349 at 396.508 kb on + strand, within DVU0349 at 396.559 kb on - strand, within DVU0349 at 396.599 kb on - strand, within DVU0349 at 396.624 kb on + strand, within DVU0349 at 396.656 kb on - strand, within DVU0349 at 396.673 kb on + strand, within DVU0349 at 396.762 kb on + strand, within DVU0349 at 396.815 kb on - strand, within DVU0349 at 396.827 kb on - strand, within DVU0349 at 396.846 kb on + strand, within DVU0349 at 396.959 kb on + strand, within DVU0349 at 396.961 kb on + strand, within DVU0349 at 396.998 kb on - strand, within DVU0349 at 397.070 kb on + strand at 397.092 kb on + strand at 397.092 kb on + strand at 397.174 kb on - strand at 397.190 kb on + strand at 397.250 kb on + strand at 397.259 kb on + strand at 397.289 kb on - strand, within spsF at 397.317 kb on + strand, within spsF at 397.326 kb on - strand, within spsF at 397.341 kb on - strand, within spsF at 397.428 kb on + strand, within spsF at 397.428 kb on + strand, within spsF at 397.481 kb on - strand, within spsF at 397.481 kb on - strand, within spsF at 397.517 kb on + strand, within spsF at 397.529 kb on + strand, within spsF at 397.568 kb on - strand, within spsF at 397.568 kb on - strand, within spsF at 397.569 kb on + strand, within spsF at 397.581 kb on + strand, within spsF at 397.598 kb on - strand, within spsF at 397.608 kb on - strand, within spsF at 397.659 kb on + strand, within spsF at 397.671 kb on + strand, within spsF at 397.677 kb on - strand, within spsF at 397.720 kb on + strand, within spsF at 397.813 kb on + strand at 397.847 kb on - strand at 397.869 kb on - strand at 397.898 kb on + strand at 397.913 kb on + strand at 397.921 kb on + strand at 398.020 kb on + strand at 398.024 kb on + strand at 398.031 kb on - strand at 398.151 kb on + strand, within DVU0351 at 398.151 kb on + strand, within DVU0351 at 398.152 kb on + strand, within DVU0351
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 395,185 - DVU0348 0.48 -1.0 395,225 + DVU0348 0.50 -1.3 395,286 - DVU0348 0.54 -1.0 395,340 - DVU0348 0.57 -1.1 395,381 + DVU0348 0.60 -0.9 395,413 - DVU0348 0.61 -1.2 395,481 - DVU0348 0.65 -0.5 395,481 - DVU0348 0.65 -0.7 395,573 - DVU0348 0.71 -0.9 395,580 + DVU0348 0.71 -0.5 395,587 - DVU0348 0.71 -0.9 395,771 + DVU0348 0.82 +1.5 395,842 + DVU0348 0.86 -0.7 395,842 + DVU0348 0.86 +1.9 395,985 - -0.6 396,047 + +0.9 396,055 - -0.1 396,169 + -0.9 396,188 + -0.8 396,287 - DVU0349 0.18 -1.0 396,303 - DVU0349 0.19 +0.6 396,313 + DVU0349 0.20 -0.5 396,350 + DVU0349 0.24 -1.2 396,378 - DVU0349 0.26 -0.3 396,380 + DVU0349 0.27 -1.4 396,389 - DVU0349 0.27 -0.3 396,393 + DVU0349 0.28 -1.1 396,428 - DVU0349 0.31 -1.0 396,508 + DVU0349 0.39 -0.7 396,559 - DVU0349 0.44 -0.5 396,599 - DVU0349 0.47 -0.0 396,624 + DVU0349 0.50 -0.9 396,656 - DVU0349 0.53 -2.1 396,673 + DVU0349 0.54 -1.0 396,762 + DVU0349 0.63 -0.4 396,815 - DVU0349 0.68 -1.0 396,827 - DVU0349 0.69 -0.9 396,846 + DVU0349 0.71 -1.1 396,959 + DVU0349 0.81 -0.1 396,961 + DVU0349 0.81 -1.4 396,998 - DVU0349 0.85 -1.2 397,070 + -0.5 397,092 + -1.4 397,092 + +1.9 397,174 - -0.1 397,190 + -0.1 397,250 + -0.0 397,259 + -0.7 397,289 - spsF DVU0350 0.14 +0.9 397,317 + spsF DVU0350 0.18 +0.9 397,326 - spsF DVU0350 0.19 -0.5 397,341 - spsF DVU0350 0.22 -0.2 397,428 + spsF DVU0350 0.34 -0.3 397,428 + spsF DVU0350 0.34 +0.3 397,481 - spsF DVU0350 0.42 +0.9 397,481 - spsF DVU0350 0.42 -0.4 397,517 + spsF DVU0350 0.47 +0.7 397,529 + spsF DVU0350 0.49 -0.1 397,568 - spsF DVU0350 0.55 -0.3 397,568 - spsF DVU0350 0.55 -1.0 397,569 + spsF DVU0350 0.55 +0.3 397,581 + spsF DVU0350 0.57 +0.9 397,598 - spsF DVU0350 0.59 -0.1 397,608 - spsF DVU0350 0.61 -0.3 397,659 + spsF DVU0350 0.68 -0.3 397,671 + spsF DVU0350 0.70 -1.1 397,677 - spsF DVU0350 0.71 +1.9 397,720 + spsF DVU0350 0.77 -0.7 397,813 + -1.3 397,847 - -1.7 397,869 - +0.3 397,898 + -0.5 397,913 + -0.3 397,921 + -1.3 398,020 + -0.6 398,024 + -0.8 398,031 - -0.4 398,151 + DVU0351 0.17 -0.5 398,151 + DVU0351 0.17 -0.9 398,152 + DVU0351 0.17 +0.9
Or see this region's nucleotide sequence