Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3369

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nthisS and DVU3369 are separated by 120 nucleotidesDVU3369 and metE are separated by 506 nucleotides DVU3368: hisS - histidyl-tRNA synthetase (TIGR), at 3,539,428 to 3,540,681 hisS DVU3369: DVU3369 - conserved domain protein (TIGR), at 3,540,802 to 3,541,590 DVU3369 DVU3371: metE - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase (TIGR), at 3,542,097 to 3,544,454 metE Position (kb) 3540 3541 3542Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3540.820 kb on + strandat 3540.820 kb on + strandat 3540.820 kb on + strandat 3540.828 kb on - strandat 3540.894 kb on - strand, within DVU3369at 3540.899 kb on + strand, within DVU3369at 3540.933 kb on + strand, within DVU3369at 3540.941 kb on - strand, within DVU3369at 3541.007 kb on + strand, within DVU3369at 3541.090 kb on - strand, within DVU3369at 3541.240 kb on - strand, within DVU3369at 3541.267 kb on - strand, within DVU3369at 3541.267 kb on - strand, within DVU3369at 3541.280 kb on - strand, within DVU3369at 3541.304 kb on + strand, within DVU3369at 3541.317 kb on + strand, within DVU3369at 3541.331 kb on - strand, within DVU3369at 3541.543 kb on + strandat 3541.543 kb on + strandat 3541.582 kb on + strandat 3541.605 kb on - strandat 3541.630 kb on - strandat 3541.646 kb on + strandat 3541.658 kb on + strandat 3541.661 kb on - strandat 3541.668 kb on + strandat 3541.676 kb on - strandat 3541.719 kb on - strandat 3541.729 kb on - strandat 3541.742 kb on + strandat 3541.779 kb on - strandat 3541.780 kb on - strandat 3541.790 kb on + strandat 3541.796 kb on - strandat 3541.804 kb on + strandat 3541.804 kb on - strandat 3541.833 kb on + strandat 3541.833 kb on + strandat 3541.841 kb on - strandat 3541.841 kb on - strandat 3541.845 kb on + strandat 3541.845 kb on + strandat 3541.845 kb on + strandat 3541.853 kb on - strandat 3541.853 kb on - strandat 3541.853 kb on - strandat 3541.866 kb on + strandat 3541.874 kb on - strandat 3541.874 kb on - strandat 3541.943 kb on + strandat 3541.943 kb on + strandat 3541.943 kb on + strandat 3541.943 kb on + strandat 3541.951 kb on - strandat 3541.951 kb on - strandat 3541.961 kb on - strandat 3541.981 kb on - strandat 3542.002 kb on + strandat 3542.002 kb on + strandat 3542.031 kb on + strandat 3542.075 kb on + strandat 3542.083 kb on - strandat 3542.108 kb on + strandat 3542.108 kb on + strandat 3542.108 kb on + strandat 3542.114 kb on + strandat 3542.122 kb on - strandat 3542.122 kb on - strandat 3542.124 kb on + strandat 3542.243 kb on + strandat 3542.249 kb on - strandat 3542.251 kb on + strandat 3542.282 kb on + strandat 3542.293 kb on + strandat 3542.320 kb on + strandat 3542.352 kb on + strand, within metEat 3542.359 kb on - strand, within metEat 3542.372 kb on + strand, within metEat 3542.372 kb on + strand, within metEat 3542.372 kb on + strand, within metEat 3542.379 kb on + strand, within metEat 3542.380 kb on - strand, within metEat 3542.395 kb on - strand, within metEat 3542.459 kb on - strand, within metE

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
remove
3,540,820 + -0.0
3,540,820 + +0.3
3,540,820 + -0.1
3,540,828 - +0.2
3,540,894 - DVU3369 0.12 -0.4
3,540,899 + DVU3369 0.12 +0.2
3,540,933 + DVU3369 0.17 -2.0
3,540,941 - DVU3369 0.18 -0.1
3,541,007 + DVU3369 0.26 -1.6
3,541,090 - DVU3369 0.37 +0.3
3,541,240 - DVU3369 0.56 -0.2
3,541,267 - DVU3369 0.59 -0.7
3,541,267 - DVU3369 0.59 -0.1
3,541,280 - DVU3369 0.61 -0.6
3,541,304 + DVU3369 0.64 -0.1
3,541,317 + DVU3369 0.65 +1.9
3,541,331 - DVU3369 0.67 +0.9
3,541,543 + -2.8
3,541,543 + +0.9
3,541,582 + -1.1
3,541,605 - -0.1
3,541,630 - +0.4
3,541,646 + -0.6
3,541,658 + -1.5
3,541,661 - -0.3
3,541,668 + +0.1
3,541,676 - -0.1
3,541,719 - -0.0
3,541,729 - -0.1
3,541,742 + +0.5
3,541,779 - +0.2
3,541,780 - +0.1
3,541,790 + +0.3
3,541,796 - +0.2
3,541,804 + +0.2
3,541,804 - +0.9
3,541,833 + -1.3
3,541,833 + +0.1
3,541,841 - +0.1
3,541,841 - +1.9
3,541,845 + -0.7
3,541,845 + -0.2
3,541,845 + -0.7
3,541,853 - +0.9
3,541,853 - -0.2
3,541,853 - +0.4
3,541,866 + -0.4
3,541,874 - -0.7
3,541,874 - +0.2
3,541,943 + +1.2
3,541,943 + -0.7
3,541,943 + +0.3
3,541,943 + -0.7
3,541,951 - -0.3
3,541,951 - -0.0
3,541,961 - +1.9
3,541,981 - +0.4
3,542,002 + -1.1
3,542,002 + +0.6
3,542,031 + -0.1
3,542,075 + -0.7
3,542,083 - +0.4
3,542,108 + -0.2
3,542,108 + -0.1
3,542,108 + +0.0
3,542,114 + -0.6
3,542,122 - -0.3
3,542,122 - +0.6
3,542,124 + +1.9
3,542,243 + -0.8
3,542,249 - -0.6
3,542,251 + -0.5
3,542,282 + +0.3
3,542,293 + -0.1
3,542,320 + +0.3
3,542,352 + metE DVU3371 0.11 -0.3
3,542,359 - metE DVU3371 0.11 +0.9
3,542,372 + metE DVU3371 0.12 -0.7
3,542,372 + metE DVU3371 0.12 -0.2
3,542,372 + metE DVU3371 0.12 +0.5
3,542,379 + metE DVU3371 0.12 +0.6
3,542,380 - metE DVU3371 0.12 +0.0
3,542,395 - metE DVU3371 0.13 +0.3
3,542,459 - metE DVU3371 0.15 -0.1

Or see this region's nucleotide sequence