Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hisS and DVU3369 are separated by 120 nucleotides DVU3369 and metE are separated by 506 nucleotides
DVU3368: hisS - histidyl-tRNA synthetase (TIGR), at 3,539,428 to 3,540,681
hisS
DVU3369: DVU3369 - conserved domain protein (TIGR), at 3,540,802 to 3,541,590
DVU3369
DVU3371: metE - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase (TIGR), at 3,542,097 to 3,544,454
metE
Position (kb)
3540
3541
3542 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3540.820 kb on + strand at 3540.820 kb on + strand at 3540.820 kb on + strand at 3540.828 kb on - strand at 3540.894 kb on - strand, within DVU3369 at 3540.899 kb on + strand, within DVU3369 at 3540.933 kb on + strand, within DVU3369 at 3540.941 kb on - strand, within DVU3369 at 3541.007 kb on + strand, within DVU3369 at 3541.090 kb on - strand, within DVU3369 at 3541.240 kb on - strand, within DVU3369 at 3541.267 kb on - strand, within DVU3369 at 3541.267 kb on - strand, within DVU3369 at 3541.280 kb on - strand, within DVU3369 at 3541.304 kb on + strand, within DVU3369 at 3541.317 kb on + strand, within DVU3369 at 3541.331 kb on - strand, within DVU3369 at 3541.543 kb on + strand at 3541.543 kb on + strand at 3541.582 kb on + strand at 3541.605 kb on - strand at 3541.630 kb on - strand at 3541.646 kb on + strand at 3541.658 kb on + strand at 3541.661 kb on - strand at 3541.668 kb on + strand at 3541.676 kb on - strand at 3541.719 kb on - strand at 3541.729 kb on - strand at 3541.742 kb on + strand at 3541.779 kb on - strand at 3541.780 kb on - strand at 3541.790 kb on + strand at 3541.796 kb on - strand at 3541.804 kb on + strand at 3541.804 kb on - strand at 3541.833 kb on + strand at 3541.833 kb on + strand at 3541.841 kb on - strand at 3541.841 kb on - strand at 3541.845 kb on + strand at 3541.845 kb on + strand at 3541.845 kb on + strand at 3541.853 kb on - strand at 3541.853 kb on - strand at 3541.853 kb on - strand at 3541.866 kb on + strand at 3541.874 kb on - strand at 3541.874 kb on - strand at 3541.943 kb on + strand at 3541.943 kb on + strand at 3541.943 kb on + strand at 3541.943 kb on + strand at 3541.951 kb on - strand at 3541.951 kb on - strand at 3541.961 kb on - strand at 3541.981 kb on - strand at 3542.002 kb on + strand at 3542.002 kb on + strand at 3542.031 kb on + strand at 3542.075 kb on + strand at 3542.083 kb on - strand at 3542.108 kb on + strand at 3542.108 kb on + strand at 3542.108 kb on + strand at 3542.114 kb on + strand at 3542.122 kb on - strand at 3542.122 kb on - strand at 3542.124 kb on + strand at 3542.243 kb on + strand at 3542.249 kb on - strand at 3542.251 kb on + strand at 3542.282 kb on + strand at 3542.293 kb on + strand at 3542.320 kb on + strand at 3542.352 kb on + strand, within metE at 3542.359 kb on - strand, within metE at 3542.372 kb on + strand, within metE at 3542.372 kb on + strand, within metE at 3542.372 kb on + strand, within metE at 3542.379 kb on + strand, within metE at 3542.380 kb on - strand, within metE at 3542.395 kb on - strand, within metE at 3542.459 kb on - strand, within metE
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 3,540,820 + -0.0 3,540,820 + +0.3 3,540,820 + -0.1 3,540,828 - +0.2 3,540,894 - DVU3369 0.12 -0.4 3,540,899 + DVU3369 0.12 +0.2 3,540,933 + DVU3369 0.17 -2.0 3,540,941 - DVU3369 0.18 -0.1 3,541,007 + DVU3369 0.26 -1.6 3,541,090 - DVU3369 0.37 +0.3 3,541,240 - DVU3369 0.56 -0.2 3,541,267 - DVU3369 0.59 -0.7 3,541,267 - DVU3369 0.59 -0.1 3,541,280 - DVU3369 0.61 -0.6 3,541,304 + DVU3369 0.64 -0.1 3,541,317 + DVU3369 0.65 +1.9 3,541,331 - DVU3369 0.67 +0.9 3,541,543 + -2.8 3,541,543 + +0.9 3,541,582 + -1.1 3,541,605 - -0.1 3,541,630 - +0.4 3,541,646 + -0.6 3,541,658 + -1.5 3,541,661 - -0.3 3,541,668 + +0.1 3,541,676 - -0.1 3,541,719 - -0.0 3,541,729 - -0.1 3,541,742 + +0.5 3,541,779 - +0.2 3,541,780 - +0.1 3,541,790 + +0.3 3,541,796 - +0.2 3,541,804 + +0.2 3,541,804 - +0.9 3,541,833 + -1.3 3,541,833 + +0.1 3,541,841 - +0.1 3,541,841 - +1.9 3,541,845 + -0.7 3,541,845 + -0.2 3,541,845 + -0.7 3,541,853 - +0.9 3,541,853 - -0.2 3,541,853 - +0.4 3,541,866 + -0.4 3,541,874 - -0.7 3,541,874 - +0.2 3,541,943 + +1.2 3,541,943 + -0.7 3,541,943 + +0.3 3,541,943 + -0.7 3,541,951 - -0.3 3,541,951 - -0.0 3,541,961 - +1.9 3,541,981 - +0.4 3,542,002 + -1.1 3,542,002 + +0.6 3,542,031 + -0.1 3,542,075 + -0.7 3,542,083 - +0.4 3,542,108 + -0.2 3,542,108 + -0.1 3,542,108 + +0.0 3,542,114 + -0.6 3,542,122 - -0.3 3,542,122 - +0.6 3,542,124 + +1.9 3,542,243 + -0.8 3,542,249 - -0.6 3,542,251 + -0.5 3,542,282 + +0.3 3,542,293 + -0.1 3,542,320 + +0.3 3,542,352 + metE DVU3371 0.11 -0.3 3,542,359 - metE DVU3371 0.11 +0.9 3,542,372 + metE DVU3371 0.12 -0.7 3,542,372 + metE DVU3371 0.12 -0.2 3,542,372 + metE DVU3371 0.12 +0.5 3,542,379 + metE DVU3371 0.12 +0.6 3,542,380 - metE DVU3371 0.12 +0.0 3,542,395 - metE DVU3371 0.13 +0.3 3,542,459 - metE DVU3371 0.15 -0.1
Or see this region's nucleotide sequence