Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3273

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3272 and DVU3273 overlap by 17 nucleotidesDVU3273 and DVU3274 overlap by 1 nucleotidesDVU3274 and DVU3275 overlap by 4 nucleotidesDVU3275 and DVU3276 are separated by 113 nucleotides DVU3272: DVU3272 - TPR domain protein (TIGR), at 3,450,229 to 3,450,852 DVU3272 DVU3273: DVU3273 - conserved hypothetical protein (TIGR), at 3,450,836 to 3,451,228 DVU3273 DVU3274: DVU3274 - hypothetical protein (TIGR), at 3,451,228 to 3,451,896 DVU3274 DVU3275: DVU3275 - hypothetical protein (TIGR), at 3,451,893 to 3,452,033 DVU3275 DVU3276: DVU3276 - ferredoxin I (TIGR), at 3,452,147 to 3,452,335 DVU3276 Position (kb) 3450 3451 3452Strain fitness (log2 ratio) -2 -1 0 1 2at 3449.862 kb on + strandat 3449.867 kb on + strandat 3449.870 kb on - strandat 3449.923 kb on + strandat 3449.955 kb on - strandat 3449.960 kb on + strandat 3449.991 kb on + strandat 3450.007 kb on - strandat 3450.012 kb on - strandat 3450.022 kb on - strandat 3450.024 kb on + strandat 3450.024 kb on + strandat 3450.027 kb on - strandat 3450.036 kb on + strandat 3450.036 kb on + strandat 3450.036 kb on + strandat 3450.038 kb on + strandat 3450.038 kb on + strandat 3450.044 kb on - strandat 3450.044 kb on - strandat 3450.044 kb on - strandat 3450.044 kb on - strandat 3450.044 kb on - strandat 3450.044 kb on - strandat 3450.044 kb on - strandat 3450.046 kb on - strandat 3450.046 kb on - strandat 3450.142 kb on + strandat 3450.165 kb on - strandat 3450.182 kb on + strandat 3450.187 kb on + strandat 3450.187 kb on + strandat 3450.187 kb on + strandat 3450.195 kb on - strandat 3450.195 kb on - strandat 3450.195 kb on - strandat 3450.247 kb on - strandat 3450.311 kb on + strand, within DVU3272at 3450.471 kb on - strand, within DVU3272at 3450.481 kb on - strand, within DVU3272at 3450.543 kb on + strand, within DVU3272at 3450.635 kb on + strand, within DVU3272at 3450.657 kb on + strand, within DVU3272at 3450.698 kb on + strand, within DVU3272at 3450.712 kb on + strand, within DVU3272at 3450.747 kb on + strand, within DVU3272at 3450.792 kb on + strandat 3450.797 kb on + strandat 3450.863 kb on - strandat 3450.864 kb on + strandat 3450.991 kb on - strand, within DVU3273at 3451.029 kb on - strand, within DVU3273at 3451.160 kb on + strand, within DVU3273at 3451.195 kb on + strandat 3451.197 kb on + strandat 3451.357 kb on - strand, within DVU3274at 3451.368 kb on - strand, within DVU3274at 3451.380 kb on + strand, within DVU3274at 3452.052 kb on - strandat 3452.067 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
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3,449,862 + -0.1
3,449,867 + +0.9
3,449,870 - -0.2
3,449,923 + +0.2
3,449,955 - +0.3
3,449,960 + -0.5
3,449,991 + -0.1
3,450,007 - +0.9
3,450,012 - -1.1
3,450,022 - +0.9
3,450,024 + -0.7
3,450,024 + -0.9
3,450,027 - -0.5
3,450,036 + -0.1
3,450,036 + +0.0
3,450,036 + -0.6
3,450,038 + +0.4
3,450,038 + +0.1
3,450,044 - +1.1
3,450,044 - -1.7
3,450,044 - -0.1
3,450,044 - +1.9
3,450,044 - +0.0
3,450,044 - -0.0
3,450,044 - +0.0
3,450,046 - -0.2
3,450,046 - -0.4
3,450,142 + -1.1
3,450,165 - -0.1
3,450,182 + -0.1
3,450,187 + +0.0
3,450,187 + +0.6
3,450,187 + -1.9
3,450,195 - -0.7
3,450,195 - -0.0
3,450,195 - +0.4
3,450,247 - -0.4
3,450,311 + DVU3272 0.13 +1.9
3,450,471 - DVU3272 0.39 +0.9
3,450,481 - DVU3272 0.40 -0.4
3,450,543 + DVU3272 0.50 -1.1
3,450,635 + DVU3272 0.65 -0.5
3,450,657 + DVU3272 0.69 -0.0
3,450,698 + DVU3272 0.75 -0.6
3,450,712 + DVU3272 0.77 -0.6
3,450,747 + DVU3272 0.83 +0.1
3,450,792 + +0.6
3,450,797 + -1.9
3,450,863 - -0.3
3,450,864 + +0.1
3,450,991 - DVU3273 0.39 -0.0
3,451,029 - DVU3273 0.49 -1.1
3,451,160 + DVU3273 0.82 -1.1
3,451,195 + -1.8
3,451,197 + -0.3
3,451,357 - DVU3274 0.19 -0.8
3,451,368 - DVU3274 0.21 -0.0
3,451,380 + DVU3274 0.23 +2.4
3,452,052 - -0.9
3,452,067 + -0.1

Or see this region's nucleotide sequence