Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3272 and DVU3273 overlap by 17 nucleotides DVU3273 and DVU3274 overlap by 1 nucleotides DVU3274 and DVU3275 overlap by 4 nucleotides DVU3275 and DVU3276 are separated by 113 nucleotides
DVU3272: DVU3272 - TPR domain protein (TIGR), at 3,450,229 to 3,450,852
DVU3272
DVU3273: DVU3273 - conserved hypothetical protein (TIGR), at 3,450,836 to 3,451,228
DVU3273
DVU3274: DVU3274 - hypothetical protein (TIGR), at 3,451,228 to 3,451,896
DVU3274
DVU3275: DVU3275 - hypothetical protein (TIGR), at 3,451,893 to 3,452,033
DVU3275
DVU3276: DVU3276 - ferredoxin I (TIGR), at 3,452,147 to 3,452,335
DVU3276
Position (kb)
3450
3451
3452 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3449.862 kb on + strand at 3449.867 kb on + strand at 3449.870 kb on - strand at 3449.923 kb on + strand at 3449.955 kb on - strand at 3449.960 kb on + strand at 3449.991 kb on + strand at 3450.007 kb on - strand at 3450.012 kb on - strand at 3450.022 kb on - strand at 3450.024 kb on + strand at 3450.024 kb on + strand at 3450.027 kb on - strand at 3450.036 kb on + strand at 3450.036 kb on + strand at 3450.036 kb on + strand at 3450.038 kb on + strand at 3450.038 kb on + strand at 3450.044 kb on - strand at 3450.044 kb on - strand at 3450.044 kb on - strand at 3450.044 kb on - strand at 3450.044 kb on - strand at 3450.044 kb on - strand at 3450.044 kb on - strand at 3450.046 kb on - strand at 3450.046 kb on - strand at 3450.142 kb on + strand at 3450.165 kb on - strand at 3450.182 kb on + strand at 3450.187 kb on + strand at 3450.187 kb on + strand at 3450.187 kb on + strand at 3450.195 kb on - strand at 3450.195 kb on - strand at 3450.195 kb on - strand at 3450.247 kb on - strand at 3450.311 kb on + strand, within DVU3272 at 3450.471 kb on - strand, within DVU3272 at 3450.481 kb on - strand, within DVU3272 at 3450.543 kb on + strand, within DVU3272 at 3450.635 kb on + strand, within DVU3272 at 3450.657 kb on + strand, within DVU3272 at 3450.698 kb on + strand, within DVU3272 at 3450.712 kb on + strand, within DVU3272 at 3450.747 kb on + strand, within DVU3272 at 3450.792 kb on + strand at 3450.797 kb on + strand at 3450.863 kb on - strand at 3450.864 kb on + strand at 3450.991 kb on - strand, within DVU3273 at 3451.029 kb on - strand, within DVU3273 at 3451.160 kb on + strand, within DVU3273 at 3451.195 kb on + strand at 3451.197 kb on + strand at 3451.357 kb on - strand, within DVU3274 at 3451.368 kb on - strand, within DVU3274 at 3451.380 kb on + strand, within DVU3274 at 3452.052 kb on - strand at 3452.067 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 3,449,862 + -0.1 3,449,867 + +0.9 3,449,870 - -0.2 3,449,923 + +0.2 3,449,955 - +0.3 3,449,960 + -0.5 3,449,991 + -0.1 3,450,007 - +0.9 3,450,012 - -1.1 3,450,022 - +0.9 3,450,024 + -0.7 3,450,024 + -0.9 3,450,027 - -0.5 3,450,036 + -0.1 3,450,036 + +0.0 3,450,036 + -0.6 3,450,038 + +0.4 3,450,038 + +0.1 3,450,044 - +1.1 3,450,044 - -1.7 3,450,044 - -0.1 3,450,044 - +1.9 3,450,044 - +0.0 3,450,044 - -0.0 3,450,044 - +0.0 3,450,046 - -0.2 3,450,046 - -0.4 3,450,142 + -1.1 3,450,165 - -0.1 3,450,182 + -0.1 3,450,187 + +0.0 3,450,187 + +0.6 3,450,187 + -1.9 3,450,195 - -0.7 3,450,195 - -0.0 3,450,195 - +0.4 3,450,247 - -0.4 3,450,311 + DVU3272 0.13 +1.9 3,450,471 - DVU3272 0.39 +0.9 3,450,481 - DVU3272 0.40 -0.4 3,450,543 + DVU3272 0.50 -1.1 3,450,635 + DVU3272 0.65 -0.5 3,450,657 + DVU3272 0.69 -0.0 3,450,698 + DVU3272 0.75 -0.6 3,450,712 + DVU3272 0.77 -0.6 3,450,747 + DVU3272 0.83 +0.1 3,450,792 + +0.6 3,450,797 + -1.9 3,450,863 - -0.3 3,450,864 + +0.1 3,450,991 - DVU3273 0.39 -0.0 3,451,029 - DVU3273 0.49 -1.1 3,451,160 + DVU3273 0.82 -1.1 3,451,195 + -1.8 3,451,197 + -0.3 3,451,357 - DVU3274 0.19 -0.8 3,451,368 - DVU3274 0.21 -0.0 3,451,380 + DVU3274 0.23 +2.4 3,452,052 - -0.9 3,452,067 + -0.1
Or see this region's nucleotide sequence