Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3207

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpurH and DVU3207 are separated by 8 nucleotidesDVU3207 and DVU3208 are separated by 21 nucleotides DVU3206: purH - phosphoribosylaminoimidazolecarboxamide formyltransferase, putative (TIGR), at 3,370,755 to 3,372,035 purH DVU3207: DVU3207 - RNB-like family protein (TIGR), at 3,372,044 to 3,374,140 DVU3207 DVU3208: DVU3208 - membrane protein, putative (TIGR), at 3,374,162 to 3,375,145 DVU3208 Position (kb) 3372 3373 3374 3375Strain fitness (log2 ratio) -2 -1 0 1 2at 3372.211 kb on + strandat 3372.268 kb on + strand, within DVU3207at 3372.459 kb on + strand, within DVU3207at 3372.462 kb on - strand, within DVU3207at 3372.528 kb on - strand, within DVU3207at 3372.580 kb on + strand, within DVU3207at 3372.673 kb on + strand, within DVU3207at 3372.782 kb on + strand, within DVU3207at 3374.772 kb on + strand, within DVU3208at 3374.968 kb on - strand, within DVU3208at 3375.007 kb on + strand, within DVU3208at 3375.015 kb on - strand, within DVU3208

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
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3,372,211 + -1.1
3,372,268 + DVU3207 0.11 -1.5
3,372,459 + DVU3207 0.20 -1.1
3,372,462 - DVU3207 0.20 -1.0
3,372,528 - DVU3207 0.23 -2.3
3,372,580 + DVU3207 0.26 +1.9
3,372,673 + DVU3207 0.30 -0.1
3,372,782 + DVU3207 0.35 -0.1
3,374,772 + DVU3208 0.62 -0.0
3,374,968 - DVU3208 0.82 -0.7
3,375,007 + DVU3208 0.86 +0.7
3,375,015 - DVU3208 0.87 +1.3

Or see this region's nucleotide sequence