Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3031 and DVU3032 overlap by 4 nucleotides DVU3032 and DVU3033 are separated by 3 nucleotides
DVU3031: DVU3031 - conserved hypothetical protein (TIGR), at 3,155,664 to 3,156,755
DVU3031
DVU3032: DVU3032 - conserved hypothetical protein (TIGR), at 3,156,752 to 3,157,381
DVU3032
DVU3033: DVU3033 - iron-sulfur cluster-binding protein (TIGR), at 3,157,385 to 3,159,538
DVU3033
Position (kb)
3156
3157
3158 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3155.834 kb on + strand, within DVU3031 at 3155.952 kb on + strand, within DVU3031 at 3155.956 kb on + strand, within DVU3031 at 3155.960 kb on - strand, within DVU3031 at 3156.019 kb on - strand, within DVU3031 at 3156.019 kb on - strand, within DVU3031 at 3156.034 kb on + strand, within DVU3031 at 3156.061 kb on + strand, within DVU3031 at 3156.061 kb on + strand, within DVU3031 at 3156.061 kb on + strand, within DVU3031 at 3156.145 kb on - strand, within DVU3031 at 3156.145 kb on - strand, within DVU3031 at 3156.276 kb on - strand, within DVU3031 at 3156.528 kb on - strand, within DVU3031 at 3156.542 kb on + strand, within DVU3031 at 3156.607 kb on - strand, within DVU3031 at 3156.648 kb on - strand at 3156.656 kb on + strand at 3156.761 kb on + strand at 3156.792 kb on + strand at 3156.832 kb on - strand, within DVU3032 at 3156.863 kb on - strand, within DVU3032 at 3157.002 kb on + strand, within DVU3032 at 3157.049 kb on + strand, within DVU3032 at 3157.143 kb on + strand, within DVU3032 at 3157.235 kb on - strand, within DVU3032 at 3157.288 kb on - strand, within DVU3032 at 3157.342 kb on - strand at 3157.383 kb on - strand at 3157.383 kb on - strand at 3157.383 kb on - strand at 3157.401 kb on - strand at 3157.597 kb on + strand at 3157.597 kb on + strand at 3157.597 kb on + strand at 3157.597 kb on + strand at 3157.597 kb on + strand at 3157.605 kb on - strand, within DVU3033 at 3157.605 kb on - strand, within DVU3033 at 3157.623 kb on + strand, within DVU3033 at 3157.631 kb on - strand, within DVU3033 at 3157.763 kb on - strand, within DVU3033 at 3157.885 kb on + strand, within DVU3033 at 3157.964 kb on + strand, within DVU3033 at 3158.069 kb on + strand, within DVU3033 at 3158.110 kb on + strand, within DVU3033 at 3158.218 kb on + strand, within DVU3033 at 3158.312 kb on + strand, within DVU3033 at 3158.312 kb on + strand, within DVU3033
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 3,155,834 + DVU3031 0.16 +1.5 3,155,952 + DVU3031 0.26 -1.9 3,155,956 + DVU3031 0.27 +0.9 3,155,960 - DVU3031 0.27 -0.4 3,156,019 - DVU3031 0.33 +0.1 3,156,019 - DVU3031 0.33 +0.9 3,156,034 + DVU3031 0.34 +0.9 3,156,061 + DVU3031 0.36 +0.9 3,156,061 + DVU3031 0.36 +1.5 3,156,061 + DVU3031 0.36 +0.9 3,156,145 - DVU3031 0.44 -0.1 3,156,145 - DVU3031 0.44 -1.2 3,156,276 - DVU3031 0.56 +1.9 3,156,528 - DVU3031 0.79 -0.6 3,156,542 + DVU3031 0.80 +0.9 3,156,607 - DVU3031 0.86 -1.4 3,156,648 - -1.0 3,156,656 + -0.4 3,156,761 + +0.9 3,156,792 + +0.2 3,156,832 - DVU3032 0.13 -1.2 3,156,863 - DVU3032 0.18 +0.9 3,157,002 + DVU3032 0.40 -1.4 3,157,049 + DVU3032 0.47 -1.1 3,157,143 + DVU3032 0.62 -0.9 3,157,235 - DVU3032 0.77 -0.3 3,157,288 - DVU3032 0.85 -0.0 3,157,342 - -1.7 3,157,383 - +0.5 3,157,383 - -0.8 3,157,383 - -1.2 3,157,401 - +0.9 3,157,597 + -3.2 3,157,597 + -1.9 3,157,597 + -0.9 3,157,597 + -0.7 3,157,597 + -0.9 3,157,605 - DVU3033 0.10 -0.5 3,157,605 - DVU3033 0.10 -2.0 3,157,623 + DVU3033 0.11 -0.4 3,157,631 - DVU3033 0.11 -0.1 3,157,763 - DVU3033 0.18 -1.7 3,157,885 + DVU3033 0.23 -0.6 3,157,964 + DVU3033 0.27 -1.3 3,158,069 + DVU3033 0.32 -0.7 3,158,110 + DVU3033 0.34 -1.2 3,158,218 + DVU3033 0.39 -1.1 3,158,312 + DVU3033 0.43 -1.2 3,158,312 + DVU3033 0.43 -1.9
Or see this region's nucleotide sequence