Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2415 and DVU2416 are separated by 329 nucleotides DVU2416 and DVU2417 overlap by 4 nucleotides DVU2417 and DVU2418 are separated by 435 nucleotides
DVU2415: DVU2415 - hypothetical protein (TIGR), at 2,522,944 to 2,524,371
DVU2415
DVU2416: DVU2416 - conserved hypothetical protein (TIGR), at 2,524,701 to 2,525,183
DVU2416
DVU2417: DVU2417 - SlyX protein (TIGR), at 2,525,180 to 2,525,401
DVU2417
DVU2418: DVU2418 - vanZ-like family protein (TIGR), at 2,525,837 to 2,526,259
DVU2418
Position (kb)
2525
2526 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2524.189 kb on + strand, within DVU2415 at 2524.189 kb on + strand, within DVU2415 at 2524.237 kb on - strand at 2524.262 kb on - strand at 2524.268 kb on + strand at 2524.278 kb on + strand at 2524.410 kb on - strand at 2524.419 kb on - strand at 2524.437 kb on + strand at 2524.457 kb on + strand at 2524.488 kb on - strand at 2524.507 kb on + strand at 2524.533 kb on - strand at 2524.540 kb on - strand at 2524.550 kb on + strand at 2524.550 kb on + strand at 2524.626 kb on - strand at 2524.762 kb on + strand, within DVU2416 at 2524.791 kb on - strand, within DVU2416 at 2524.829 kb on + strand, within DVU2416 at 2524.837 kb on - strand, within DVU2416 at 2524.837 kb on - strand, within DVU2416 at 2524.957 kb on - strand, within DVU2416 at 2524.960 kb on + strand, within DVU2416 at 2524.985 kb on + strand, within DVU2416 at 2525.007 kb on + strand, within DVU2416 at 2525.033 kb on - strand, within DVU2416 at 2525.033 kb on - strand, within DVU2416 at 2525.033 kb on - strand, within DVU2416 at 2525.076 kb on - strand, within DVU2416 at 2525.263 kb on + strand, within DVU2417 at 2525.332 kb on + strand, within DVU2417 at 2525.345 kb on - strand, within DVU2417 at 2525.539 kb on + strand at 2525.566 kb on + strand at 2525.570 kb on + strand at 2525.573 kb on - strand at 2525.589 kb on + strand at 2525.621 kb on + strand at 2525.621 kb on + strand at 2525.623 kb on + strand at 2525.633 kb on + strand at 2525.695 kb on + strand at 2525.804 kb on - strand at 2525.816 kb on + strand at 2525.896 kb on - strand, within DVU2418 at 2525.912 kb on + strand, within DVU2418 at 2526.122 kb on - strand, within DVU2418 at 2526.124 kb on + strand, within DVU2418 at 2526.201 kb on - strand, within DVU2418 at 2526.228 kb on + strand at 2526.390 kb on + strand at 2526.390 kb on + strand at 2526.390 kb on + strand at 2526.390 kb on + strand at 2526.390 kb on + strand at 2526.398 kb on - strand at 2526.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 2,524,189 + DVU2415 0.87 +0.9 2,524,189 + DVU2415 0.87 +0.9 2,524,237 - +0.2 2,524,262 - +0.4 2,524,268 + -0.6 2,524,278 + +2.9 2,524,410 - +0.5 2,524,419 - +0.5 2,524,437 + -0.1 2,524,457 + -0.4 2,524,488 - -0.1 2,524,507 + +0.7 2,524,533 - -0.1 2,524,540 - -0.2 2,524,550 + -1.1 2,524,550 + -2.2 2,524,626 - +0.1 2,524,762 + DVU2416 0.13 +0.0 2,524,791 - DVU2416 0.19 +0.9 2,524,829 + DVU2416 0.27 -0.2 2,524,837 - DVU2416 0.28 +0.1 2,524,837 - DVU2416 0.28 -0.1 2,524,957 - DVU2416 0.53 +0.9 2,524,960 + DVU2416 0.54 +0.3 2,524,985 + DVU2416 0.59 -0.6 2,525,007 + DVU2416 0.63 -0.5 2,525,033 - DVU2416 0.69 -0.9 2,525,033 - DVU2416 0.69 +0.5 2,525,033 - DVU2416 0.69 -0.6 2,525,076 - DVU2416 0.78 +0.5 2,525,263 + DVU2417 0.37 -1.6 2,525,332 + DVU2417 0.68 -0.6 2,525,345 - DVU2417 0.74 +0.9 2,525,539 + -0.3 2,525,566 + -0.3 2,525,570 + -0.5 2,525,573 - -1.5 2,525,589 + +0.1 2,525,621 + -0.6 2,525,621 + -0.4 2,525,623 + -0.2 2,525,633 + -1.0 2,525,695 + +0.9 2,525,804 - +0.8 2,525,816 + -0.5 2,525,896 - DVU2418 0.14 +0.2 2,525,912 + DVU2418 0.18 -0.2 2,526,122 - DVU2418 0.67 -0.1 2,526,124 + DVU2418 0.68 +0.7 2,526,201 - DVU2418 0.86 +0.2 2,526,228 + -0.6 2,526,390 + -0.7 2,526,390 + +0.9 2,526,390 + -0.3 2,526,390 + -0.1 2,526,390 + -0.1 2,526,398 - -0.9 2,526,398 - -0.2
Or see this region's nucleotide sequence