Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2417

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2415 and DVU2416 are separated by 329 nucleotidesDVU2416 and DVU2417 overlap by 4 nucleotidesDVU2417 and DVU2418 are separated by 435 nucleotides DVU2415: DVU2415 - hypothetical protein (TIGR), at 2,522,944 to 2,524,371 DVU2415 DVU2416: DVU2416 - conserved hypothetical protein (TIGR), at 2,524,701 to 2,525,183 DVU2416 DVU2417: DVU2417 - SlyX protein (TIGR), at 2,525,180 to 2,525,401 DVU2417 DVU2418: DVU2418 - vanZ-like family protein (TIGR), at 2,525,837 to 2,526,259 DVU2418 Position (kb) 2525 2526Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2524.189 kb on + strand, within DVU2415at 2524.189 kb on + strand, within DVU2415at 2524.237 kb on - strandat 2524.262 kb on - strandat 2524.268 kb on + strandat 2524.278 kb on + strandat 2524.410 kb on - strandat 2524.419 kb on - strandat 2524.437 kb on + strandat 2524.457 kb on + strandat 2524.488 kb on - strandat 2524.507 kb on + strandat 2524.533 kb on - strandat 2524.540 kb on - strandat 2524.550 kb on + strandat 2524.550 kb on + strandat 2524.626 kb on - strandat 2524.762 kb on + strand, within DVU2416at 2524.791 kb on - strand, within DVU2416at 2524.829 kb on + strand, within DVU2416at 2524.837 kb on - strand, within DVU2416at 2524.837 kb on - strand, within DVU2416at 2524.957 kb on - strand, within DVU2416at 2524.960 kb on + strand, within DVU2416at 2524.985 kb on + strand, within DVU2416at 2525.007 kb on + strand, within DVU2416at 2525.033 kb on - strand, within DVU2416at 2525.033 kb on - strand, within DVU2416at 2525.033 kb on - strand, within DVU2416at 2525.076 kb on - strand, within DVU2416at 2525.263 kb on + strand, within DVU2417at 2525.332 kb on + strand, within DVU2417at 2525.345 kb on - strand, within DVU2417at 2525.539 kb on + strandat 2525.566 kb on + strandat 2525.570 kb on + strandat 2525.573 kb on - strandat 2525.589 kb on + strandat 2525.621 kb on + strandat 2525.621 kb on + strandat 2525.623 kb on + strandat 2525.633 kb on + strandat 2525.695 kb on + strandat 2525.804 kb on - strandat 2525.816 kb on + strandat 2525.896 kb on - strand, within DVU2418at 2525.912 kb on + strand, within DVU2418at 2526.122 kb on - strand, within DVU2418at 2526.124 kb on + strand, within DVU2418at 2526.201 kb on - strand, within DVU2418at 2526.228 kb on + strandat 2526.390 kb on + strandat 2526.390 kb on + strandat 2526.390 kb on + strandat 2526.390 kb on + strandat 2526.390 kb on + strandat 2526.398 kb on - strandat 2526.398 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
remove
2,524,189 + DVU2415 0.87 +0.9
2,524,189 + DVU2415 0.87 +0.9
2,524,237 - +0.2
2,524,262 - +0.4
2,524,268 + -0.6
2,524,278 + +2.9
2,524,410 - +0.5
2,524,419 - +0.5
2,524,437 + -0.1
2,524,457 + -0.4
2,524,488 - -0.1
2,524,507 + +0.7
2,524,533 - -0.1
2,524,540 - -0.2
2,524,550 + -1.1
2,524,550 + -2.2
2,524,626 - +0.1
2,524,762 + DVU2416 0.13 +0.0
2,524,791 - DVU2416 0.19 +0.9
2,524,829 + DVU2416 0.27 -0.2
2,524,837 - DVU2416 0.28 +0.1
2,524,837 - DVU2416 0.28 -0.1
2,524,957 - DVU2416 0.53 +0.9
2,524,960 + DVU2416 0.54 +0.3
2,524,985 + DVU2416 0.59 -0.6
2,525,007 + DVU2416 0.63 -0.5
2,525,033 - DVU2416 0.69 -0.9
2,525,033 - DVU2416 0.69 +0.5
2,525,033 - DVU2416 0.69 -0.6
2,525,076 - DVU2416 0.78 +0.5
2,525,263 + DVU2417 0.37 -1.6
2,525,332 + DVU2417 0.68 -0.6
2,525,345 - DVU2417 0.74 +0.9
2,525,539 + -0.3
2,525,566 + -0.3
2,525,570 + -0.5
2,525,573 - -1.5
2,525,589 + +0.1
2,525,621 + -0.6
2,525,621 + -0.4
2,525,623 + -0.2
2,525,633 + -1.0
2,525,695 + +0.9
2,525,804 - +0.8
2,525,816 + -0.5
2,525,896 - DVU2418 0.14 +0.2
2,525,912 + DVU2418 0.18 -0.2
2,526,122 - DVU2418 0.67 -0.1
2,526,124 + DVU2418 0.68 +0.7
2,526,201 - DVU2418 0.86 +0.2
2,526,228 + -0.6
2,526,390 + -0.7
2,526,390 + +0.9
2,526,390 + -0.3
2,526,390 + -0.1
2,526,390 + -0.1
2,526,398 - -0.9
2,526,398 - -0.2

Or see this region's nucleotide sequence