Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2337

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2336 and DVU2337 are separated by 32 nucleotidesDVU2337 and DVU2338 are separated by 29 nucleotidesDVU2338 and prmA are separated by 249 nucleotides DVU2336: DVU2336 - carboxyl-terminal protease (TIGR), at 2,431,992 to 2,433,278 DVU2336 DVU2337: DVU2337 - peptidase, M23/M37 family (TIGR), at 2,433,311 to 2,434,462 DVU2337 DVU2338: DVU2338 - DNA repair protein, HhH-GPD family (TIGR), at 2,434,492 to 2,435,172 DVU2338 DVU2339: prmA - ribosomal protein L11 methyltransferase, putative (TIGR), at 2,435,422 to 2,436,273 prmA Position (kb) 2433 2434 2435Strain fitness (log2 ratio) -1 0 1at 2433.314 kb on - strandat 2433.484 kb on - strand, within DVU2337at 2433.503 kb on - strand, within DVU2337at 2433.510 kb on + strand, within DVU2337at 2433.563 kb on - strand, within DVU2337at 2433.678 kb on + strand, within DVU2337at 2433.747 kb on - strand, within DVU2337at 2433.749 kb on + strand, within DVU2337at 2433.816 kb on - strand, within DVU2337at 2433.853 kb on - strand, within DVU2337at 2433.868 kb on - strand, within DVU2337at 2433.868 kb on - strand, within DVU2337at 2433.907 kb on + strand, within DVU2337at 2433.916 kb on + strand, within DVU2337at 2433.961 kb on + strand, within DVU2337at 2433.974 kb on + strand, within DVU2337at 2434.060 kb on + strand, within DVU2337at 2434.068 kb on - strand, within DVU2337at 2434.151 kb on + strand, within DVU2337at 2434.159 kb on - strand, within DVU2337at 2434.259 kb on + strand, within DVU2337at 2434.315 kb on + strand, within DVU2337at 2434.362 kb on - strandat 2434.388 kb on - strandat 2434.455 kb on + strandat 2434.467 kb on - strandat 2434.489 kb on + strandat 2434.497 kb on - strandat 2434.572 kb on - strand, within DVU2338at 2434.583 kb on - strand, within DVU2338at 2434.648 kb on + strand, within DVU2338at 2434.681 kb on + strand, within DVU2338at 2434.732 kb on - strand, within DVU2338at 2434.742 kb on + strand, within DVU2338at 2434.896 kb on + strand, within DVU2338at 2435.055 kb on + strand, within DVU2338at 2435.109 kb on + strandat 2435.181 kb on - strandat 2435.274 kb on + strandat 2435.282 kb on - strandat 2435.363 kb on + strandat 2435.363 kb on + strandat 2435.390 kb on - strandat 2435.426 kb on + strandat 2435.426 kb on + strandat 2435.434 kb on - strandat 2435.436 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
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2,433,314 - +1.0
2,433,484 - DVU2337 0.15 -0.4
2,433,503 - DVU2337 0.17 +0.4
2,433,510 + DVU2337 0.17 -0.7
2,433,563 - DVU2337 0.22 -0.1
2,433,678 + DVU2337 0.32 -0.7
2,433,747 - DVU2337 0.38 -0.8
2,433,749 + DVU2337 0.38 -0.2
2,433,816 - DVU2337 0.44 -0.3
2,433,853 - DVU2337 0.47 -0.5
2,433,868 - DVU2337 0.48 -0.7
2,433,868 - DVU2337 0.48 -0.6
2,433,907 + DVU2337 0.52 -0.2
2,433,916 + DVU2337 0.53 -0.7
2,433,961 + DVU2337 0.56 -0.5
2,433,974 + DVU2337 0.58 +1.0
2,434,060 + DVU2337 0.65 -0.6
2,434,068 - DVU2337 0.66 -0.4
2,434,151 + DVU2337 0.73 -0.8
2,434,159 - DVU2337 0.74 -0.9
2,434,259 + DVU2337 0.82 +0.1
2,434,315 + DVU2337 0.87 -0.3
2,434,362 - -0.4
2,434,388 - -0.5
2,434,455 + -0.4
2,434,467 - -0.5
2,434,489 + -0.5
2,434,497 - +0.7
2,434,572 - DVU2338 0.12 -0.6
2,434,583 - DVU2338 0.13 +0.4
2,434,648 + DVU2338 0.23 -0.0
2,434,681 + DVU2338 0.28 -0.5
2,434,732 - DVU2338 0.35 -0.8
2,434,742 + DVU2338 0.37 -0.1
2,434,896 + DVU2338 0.59 -1.4
2,435,055 + DVU2338 0.83 +0.4
2,435,109 + -1.4
2,435,181 - +0.2
2,435,274 + +0.3
2,435,282 - +1.4
2,435,363 + +0.4
2,435,363 + -0.6
2,435,390 - +1.0
2,435,426 + +0.8
2,435,426 + -0.9
2,435,434 - +0.3
2,435,436 + +1.1

Or see this region's nucleotide sequence