Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2302 and DVU2303 are separated by 75 nucleotides DVU2303 and DVU2305 are separated by 327 nucleotides DVU2305 and DVU2306 overlap by 8 nucleotides
DVU2302: DVU2302 - glutathione-regulated potassium-efflux system protein KefB, putative (TIGR), at 2,394,641 to 2,396,659
DVU2302
DVU2303: DVU2303 - conserved domain protein (TIGR), at 2,396,735 to 2,398,162
DVU2303
DVU2305: DVU2305 - conserved hypothetical protein (TIGR), at 2,398,490 to 2,399,119
DVU2305
DVU2306: DVU2306 - phosphate transporter family protein (TIGR), at 2,399,112 to 2,400,122
DVU2306
Position (kb)
2396
2397
2398
2399 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2395.742 kb on + strand, within DVU2302 at 2395.749 kb on + strand, within DVU2302 at 2395.749 kb on + strand, within DVU2302 at 2395.749 kb on + strand, within DVU2302 at 2395.749 kb on + strand, within DVU2302 at 2395.751 kb on - strand, within DVU2302 at 2395.757 kb on - strand, within DVU2302 at 2395.757 kb on - strand, within DVU2302 at 2395.757 kb on - strand, within DVU2302 at 2395.757 kb on - strand, within DVU2302 at 2395.801 kb on + strand, within DVU2302 at 2395.809 kb on - strand, within DVU2302 at 2395.837 kb on - strand, within DVU2302 at 2395.844 kb on - strand, within DVU2302 at 2395.844 kb on - strand, within DVU2302 at 2395.844 kb on - strand, within DVU2302 at 2395.872 kb on - strand, within DVU2302 at 2395.877 kb on - strand, within DVU2302 at 2395.889 kb on + strand, within DVU2302 at 2395.889 kb on + strand, within DVU2302 at 2395.897 kb on - strand, within DVU2302 at 2395.897 kb on - strand, within DVU2302 at 2395.929 kb on - strand, within DVU2302 at 2395.979 kb on - strand, within DVU2302 at 2396.078 kb on - strand, within DVU2302 at 2396.117 kb on + strand, within DVU2302 at 2396.132 kb on + strand, within DVU2302 at 2396.230 kb on - strand, within DVU2302 at 2396.295 kb on - strand, within DVU2302 at 2396.351 kb on + strand, within DVU2302 at 2396.359 kb on - strand, within DVU2302 at 2396.365 kb on + strand, within DVU2302 at 2396.386 kb on - strand, within DVU2302 at 2396.391 kb on - strand, within DVU2302 at 2396.428 kb on + strand, within DVU2302 at 2396.436 kb on - strand, within DVU2302 at 2396.548 kb on - strand at 2396.633 kb on - strand at 2396.851 kb on + strand at 2397.952 kb on - strand, within DVU2303 at 2397.952 kb on - strand, within DVU2303 at 2397.964 kb on - strand, within DVU2303 at 2398.168 kb on + strand at 2398.264 kb on - strand at 2398.276 kb on - strand at 2398.378 kb on - strand at 2398.385 kb on + strand at 2398.720 kb on + strand, within DVU2305 at 2398.729 kb on + strand, within DVU2305 at 2398.737 kb on - strand, within DVU2305 at 2398.848 kb on - strand, within DVU2305 at 2399.112 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 2,395,742 + DVU2302 0.55 +0.4 2,395,749 + DVU2302 0.55 +1.2 2,395,749 + DVU2302 0.55 -0.2 2,395,749 + DVU2302 0.55 -0.5 2,395,749 + DVU2302 0.55 -0.0 2,395,751 - DVU2302 0.55 +1.2 2,395,757 - DVU2302 0.55 -0.0 2,395,757 - DVU2302 0.55 +0.4 2,395,757 - DVU2302 0.55 -0.1 2,395,757 - DVU2302 0.55 -0.2 2,395,801 + DVU2302 0.57 +0.0 2,395,809 - DVU2302 0.58 -0.6 2,395,837 - DVU2302 0.59 -0.1 2,395,844 - DVU2302 0.60 -0.0 2,395,844 - DVU2302 0.60 -1.3 2,395,844 - DVU2302 0.60 -0.6 2,395,872 - DVU2302 0.61 -1.1 2,395,877 - DVU2302 0.61 +0.1 2,395,889 + DVU2302 0.62 -0.2 2,395,889 + DVU2302 0.62 -0.5 2,395,897 - DVU2302 0.62 -0.6 2,395,897 - DVU2302 0.62 -0.2 2,395,929 - DVU2302 0.64 -1.0 2,395,979 - DVU2302 0.66 +2.0 2,396,078 - DVU2302 0.71 -1.4 2,396,117 + DVU2302 0.73 -0.1 2,396,132 + DVU2302 0.74 -0.8 2,396,230 - DVU2302 0.79 -0.2 2,396,295 - DVU2302 0.82 +0.6 2,396,351 + DVU2302 0.85 -0.0 2,396,359 - DVU2302 0.85 -0.6 2,396,365 + DVU2302 0.85 -0.2 2,396,386 - DVU2302 0.86 -0.5 2,396,391 - DVU2302 0.87 -1.0 2,396,428 + DVU2302 0.89 +0.1 2,396,436 - DVU2302 0.89 +1.0 2,396,548 - -2.0 2,396,633 - -0.0 2,396,851 + +1.4 2,397,952 - DVU2303 0.85 -0.7 2,397,952 - DVU2303 0.85 -0.6 2,397,964 - DVU2303 0.86 -1.9 2,398,168 + -0.2 2,398,264 - -0.9 2,398,276 - -1.0 2,398,378 - -0.6 2,398,385 + -0.6 2,398,720 + DVU2305 0.37 -0.6 2,398,729 + DVU2305 0.38 -0.4 2,398,737 - DVU2305 0.39 -0.3 2,398,848 - DVU2305 0.57 +1.0 2,399,112 - -1.6
Or see this region's nucleotide sequence