Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2303

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2302 and DVU2303 are separated by 75 nucleotidesDVU2303 and DVU2305 are separated by 327 nucleotidesDVU2305 and DVU2306 overlap by 8 nucleotides DVU2302: DVU2302 - glutathione-regulated potassium-efflux system protein KefB, putative (TIGR), at 2,394,641 to 2,396,659 DVU2302 DVU2303: DVU2303 - conserved domain protein (TIGR), at 2,396,735 to 2,398,162 DVU2303 DVU2305: DVU2305 - conserved hypothetical protein (TIGR), at 2,398,490 to 2,399,119 DVU2305 DVU2306: DVU2306 - phosphate transporter family protein (TIGR), at 2,399,112 to 2,400,122 DVU2306 Position (kb) 2396 2397 2398 2399Strain fitness (log2 ratio) -2 -1 0 1 2at 2395.742 kb on + strand, within DVU2302at 2395.749 kb on + strand, within DVU2302at 2395.749 kb on + strand, within DVU2302at 2395.749 kb on + strand, within DVU2302at 2395.749 kb on + strand, within DVU2302at 2395.751 kb on - strand, within DVU2302at 2395.757 kb on - strand, within DVU2302at 2395.757 kb on - strand, within DVU2302at 2395.757 kb on - strand, within DVU2302at 2395.757 kb on - strand, within DVU2302at 2395.801 kb on + strand, within DVU2302at 2395.809 kb on - strand, within DVU2302at 2395.837 kb on - strand, within DVU2302at 2395.844 kb on - strand, within DVU2302at 2395.844 kb on - strand, within DVU2302at 2395.844 kb on - strand, within DVU2302at 2395.872 kb on - strand, within DVU2302at 2395.877 kb on - strand, within DVU2302at 2395.889 kb on + strand, within DVU2302at 2395.889 kb on + strand, within DVU2302at 2395.897 kb on - strand, within DVU2302at 2395.897 kb on - strand, within DVU2302at 2395.929 kb on - strand, within DVU2302at 2395.979 kb on - strand, within DVU2302at 2396.078 kb on - strand, within DVU2302at 2396.117 kb on + strand, within DVU2302at 2396.132 kb on + strand, within DVU2302at 2396.230 kb on - strand, within DVU2302at 2396.295 kb on - strand, within DVU2302at 2396.351 kb on + strand, within DVU2302at 2396.359 kb on - strand, within DVU2302at 2396.365 kb on + strand, within DVU2302at 2396.386 kb on - strand, within DVU2302at 2396.391 kb on - strand, within DVU2302at 2396.428 kb on + strand, within DVU2302at 2396.436 kb on - strand, within DVU2302at 2396.548 kb on - strandat 2396.633 kb on - strandat 2396.851 kb on + strandat 2397.952 kb on - strand, within DVU2303at 2397.952 kb on - strand, within DVU2303at 2397.964 kb on - strand, within DVU2303at 2398.168 kb on + strandat 2398.264 kb on - strandat 2398.276 kb on - strandat 2398.378 kb on - strandat 2398.385 kb on + strandat 2398.720 kb on + strand, within DVU2305at 2398.729 kb on + strand, within DVU2305at 2398.737 kb on - strand, within DVU2305at 2398.848 kb on - strand, within DVU2305at 2399.112 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
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2,395,742 + DVU2302 0.55 +0.4
2,395,749 + DVU2302 0.55 +1.2
2,395,749 + DVU2302 0.55 -0.2
2,395,749 + DVU2302 0.55 -0.5
2,395,749 + DVU2302 0.55 -0.0
2,395,751 - DVU2302 0.55 +1.2
2,395,757 - DVU2302 0.55 -0.0
2,395,757 - DVU2302 0.55 +0.4
2,395,757 - DVU2302 0.55 -0.1
2,395,757 - DVU2302 0.55 -0.2
2,395,801 + DVU2302 0.57 +0.0
2,395,809 - DVU2302 0.58 -0.6
2,395,837 - DVU2302 0.59 -0.1
2,395,844 - DVU2302 0.60 -0.0
2,395,844 - DVU2302 0.60 -1.3
2,395,844 - DVU2302 0.60 -0.6
2,395,872 - DVU2302 0.61 -1.1
2,395,877 - DVU2302 0.61 +0.1
2,395,889 + DVU2302 0.62 -0.2
2,395,889 + DVU2302 0.62 -0.5
2,395,897 - DVU2302 0.62 -0.6
2,395,897 - DVU2302 0.62 -0.2
2,395,929 - DVU2302 0.64 -1.0
2,395,979 - DVU2302 0.66 +2.0
2,396,078 - DVU2302 0.71 -1.4
2,396,117 + DVU2302 0.73 -0.1
2,396,132 + DVU2302 0.74 -0.8
2,396,230 - DVU2302 0.79 -0.2
2,396,295 - DVU2302 0.82 +0.6
2,396,351 + DVU2302 0.85 -0.0
2,396,359 - DVU2302 0.85 -0.6
2,396,365 + DVU2302 0.85 -0.2
2,396,386 - DVU2302 0.86 -0.5
2,396,391 - DVU2302 0.87 -1.0
2,396,428 + DVU2302 0.89 +0.1
2,396,436 - DVU2302 0.89 +1.0
2,396,548 - -2.0
2,396,633 - -0.0
2,396,851 + +1.4
2,397,952 - DVU2303 0.85 -0.7
2,397,952 - DVU2303 0.85 -0.6
2,397,964 - DVU2303 0.86 -1.9
2,398,168 + -0.2
2,398,264 - -0.9
2,398,276 - -1.0
2,398,378 - -0.6
2,398,385 + -0.6
2,398,720 + DVU2305 0.37 -0.6
2,398,729 + DVU2305 0.38 -0.4
2,398,737 - DVU2305 0.39 -0.3
2,398,848 - DVU2305 0.57 +1.0
2,399,112 - -1.6

Or see this region's nucleotide sequence