Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1725 and DVU1726 are separated by 135 nucleotides DVU1726 and DVU1727 overlap by 4 nucleotides DVU1727 and DVU1728 overlap by 1 nucleotides DVU1728 and DVU1729 are separated by 270 nucleotides DVU1729 and DVU1730 are separated by 9 nucleotides DVU1730 and DVU1731 are separated by 107 nucleotides
DVU1725: DVU1725 - conserved hypothetical protein (TIGR), at 1,798,920 to 1,799,528
DVU1725
DVU1726: DVU1726 - hypothetical protein (TIGR), at 1,799,664 to 1,799,912
DVU1726
DVU1727: DVU1727 - hypothetical protein (TIGR), at 1,799,909 to 1,800,259
DVU1727
DVU1728: DVU1728 - conserved hypothetical protein (TIGR), at 1,800,259 to 1,800,675
DVU1728
DVU1729: DVU1729 - killer protein, putative (TIGR), at 1,800,946 to 1,801,224
DVU1729
DVU1730: DVU1730 - DNA-binding protein (TIGR), at 1,801,234 to 1,801,539
DVU1730
DVU1731: DVU1731 - hypothetical protein (TIGR), at 1,801,647 to 1,801,817
DVU1731
Position (kb)
1800
1801 Strain fitness (log2 ratio)
-2
-1
0
1 at 1799.274 kb on + strand, within DVU1725 at 1799.287 kb on + strand, within DVU1725 at 1799.397 kb on + strand, within DVU1725 at 1799.433 kb on - strand, within DVU1725 at 1799.524 kb on + strand at 1799.806 kb on - strand, within DVU1726 at 1799.970 kb on - strand, within DVU1727 at 1799.994 kb on + strand, within DVU1727 at 1800.048 kb on - strand, within DVU1727 at 1800.064 kb on + strand, within DVU1727 at 1800.593 kb on - strand, within DVU1728 at 1800.632 kb on + strand, within DVU1728 at 1800.671 kb on + strand at 1800.683 kb on + strand at 1800.683 kb on + strand at 1800.753 kb on + strand at 1800.777 kb on - strand at 1800.801 kb on - strand at 1800.859 kb on - strand at 1800.942 kb on + strand at 1801.033 kb on - strand, within DVU1729 at 1801.055 kb on + strand, within DVU1729 at 1801.108 kb on + strand, within DVU1729 at 1801.132 kb on - strand, within DVU1729 at 1801.545 kb on + strand at 1801.547 kb on + strand at 1801.547 kb on + strand at 1801.566 kb on + strand at 1801.591 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 1,799,274 + DVU1725 0.58 +1.0 1,799,287 + DVU1725 0.60 -0.8 1,799,397 + DVU1725 0.78 +0.9 1,799,433 - DVU1725 0.84 -0.5 1,799,524 + +0.0 1,799,806 - DVU1726 0.57 -0.5 1,799,970 - DVU1727 0.17 +0.0 1,799,994 + DVU1727 0.24 -2.2 1,800,048 - DVU1727 0.40 -0.5 1,800,064 + DVU1727 0.44 +0.6 1,800,593 - DVU1728 0.80 -1.2 1,800,632 + DVU1728 0.89 -1.6 1,800,671 + +0.1 1,800,683 + +0.2 1,800,683 + -0.5 1,800,753 + -0.1 1,800,777 - +0.6 1,800,801 - -0.2 1,800,859 - +0.4 1,800,942 + +0.0 1,801,033 - DVU1729 0.31 +0.6 1,801,055 + DVU1729 0.39 -0.2 1,801,108 + DVU1729 0.58 -1.8 1,801,132 - DVU1729 0.67 +0.2 1,801,545 + -0.6 1,801,547 + -0.3 1,801,547 + -0.4 1,801,566 + -0.8 1,801,591 - -0.3
Or see this region's nucleotide sequence