Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1666

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1664 and aroQ are separated by 144 nucleotidesaroQ and efp are separated by 40 nucleotidesefp and ftsK are separated by 129 nucleotides DVU1664: DVU1664 - GTP-binding protein (TIGR), at 1,743,911 to 1,744,561 DVU1664 DVU1665: aroQ - 3-dehydroquinate dehydratase, type II (TIGR), at 1,744,706 to 1,745,173 aroQ DVU1666: efp - translation elongation factor P (TIGR), at 1,745,214 to 1,745,771 efp DVU1667: ftsK - FtsK/SpoIIIE family protein (TIGR), at 1,745,901 to 1,748,231 ftsK Position (kb) 1745 1746Strain fitness (log2 ratio) -1 0 1at 1744.640 kb on - strandat 1744.675 kb on - strandat 1745.241 kb on + strandat 1745.256 kb on - strandat 1745.322 kb on - strand, within efpat 1745.465 kb on + strand, within efpat 1745.502 kb on - strand, within efpat 1745.525 kb on + strand, within efpat 1745.579 kb on - strand, within efpat 1745.620 kb on - strand, within efpat 1745.636 kb on + strand, within efpat 1745.636 kb on + strand, within efpat 1745.644 kb on - strand, within efpat 1745.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
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1,744,640 - -0.6
1,744,675 - -0.3
1,745,241 + +0.0
1,745,256 - -0.5
1,745,322 - efp DVU1666 0.19 +0.7
1,745,465 + efp DVU1666 0.45 -1.2
1,745,502 - efp DVU1666 0.52 +1.0
1,745,525 + efp DVU1666 0.56 +0.4
1,745,579 - efp DVU1666 0.65 -0.5
1,745,620 - efp DVU1666 0.73 +0.6
1,745,636 + efp DVU1666 0.76 -0.3
1,745,636 + efp DVU1666 0.76 -0.8
1,745,644 - efp DVU1666 0.77 -0.6
1,745,809 + -0.4

Or see this region's nucleotide sequence