Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1634

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1631 and DVU1632 are separated by 28 nucleotidesDVU1632 and DVU1633 are separated by 1 nucleotidesDVU1633 and DVU1634 are separated by 25 nucleotidesDVU1634 and DVU1635 overlap by 14 nucleotidesDVU1635 and ppaC are separated by 43 nucleotides DVU1631: DVU1631 - conserved hypothetical protein (TIGR), at 1,714,949 to 1,715,860 DVU1631 DVU1632: DVU1632 - PTS system, IIA component (TIGR), at 1,715,889 to 1,716,326 DVU1632 DVU1633: DVU1633 - PTS system, IIB component (TIGR), at 1,716,328 to 1,716,789 DVU1633 DVU1634: DVU1634 - membrane protein, putative (TIGR), at 1,716,815 to 1,717,486 DVU1634 DVU1635: DVU1635 - hypothetical protein (TIGR), at 1,717,473 to 1,717,577 DVU1635 DVU1636: ppaC - inorganic pyrophosphatase, manganese-dependent (TIGR), at 1,717,621 to 1,718,541 ppaC Position (kb) 1716 1717 1718Strain fitness (log2 ratio) -1 0 1at 1715.900 kb on + strandat 1715.946 kb on + strand, within DVU1632at 1715.946 kb on + strand, within DVU1632at 1715.954 kb on - strand, within DVU1632at 1715.954 kb on - strand, within DVU1632at 1715.954 kb on - strand, within DVU1632at 1716.121 kb on - strand, within DVU1632at 1716.184 kb on + strand, within DVU1632at 1716.184 kb on + strand, within DVU1632at 1716.395 kb on - strand, within DVU1633at 1716.490 kb on - strand, within DVU1633at 1716.811 kb on - strandat 1716.992 kb on - strand, within DVU1634at 1717.171 kb on + strand, within DVU1634at 1717.189 kb on - strand, within DVU1634at 1717.338 kb on + strand, within DVU1634

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
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1,715,900 + -0.3
1,715,946 + DVU1632 0.13 +1.0
1,715,946 + DVU1632 0.13 -0.7
1,715,954 - DVU1632 0.15 -1.4
1,715,954 - DVU1632 0.15 -1.3
1,715,954 - DVU1632 0.15 -0.5
1,716,121 - DVU1632 0.53 +0.0
1,716,184 + DVU1632 0.67 -0.2
1,716,184 + DVU1632 0.67 +0.6
1,716,395 - DVU1633 0.15 +0.0
1,716,490 - DVU1633 0.35 -0.6
1,716,811 - +0.3
1,716,992 - DVU1634 0.26 -0.6
1,717,171 + DVU1634 0.53 +0.0
1,717,189 - DVU1634 0.56 +0.0
1,717,338 + DVU1634 0.78 -0.6

Or see this region's nucleotide sequence