Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1631 and DVU1632 are separated by 28 nucleotides DVU1632 and DVU1633 are separated by 1 nucleotides DVU1633 and DVU1634 are separated by 25 nucleotides DVU1634 and DVU1635 overlap by 14 nucleotides DVU1635 and ppaC are separated by 43 nucleotides
DVU1631: DVU1631 - conserved hypothetical protein (TIGR), at 1,714,949 to 1,715,860
DVU1631
DVU1632: DVU1632 - PTS system, IIA component (TIGR), at 1,715,889 to 1,716,326
DVU1632
DVU1633: DVU1633 - PTS system, IIB component (TIGR), at 1,716,328 to 1,716,789
DVU1633
DVU1634: DVU1634 - membrane protein, putative (TIGR), at 1,716,815 to 1,717,486
DVU1634
DVU1635: DVU1635 - hypothetical protein (TIGR), at 1,717,473 to 1,717,577
DVU1635
DVU1636: ppaC - inorganic pyrophosphatase, manganese-dependent (TIGR), at 1,717,621 to 1,718,541
ppaC
Position (kb)
1716
1717
1718 Strain fitness (log2 ratio)
-1
0
1 at 1715.900 kb on + strand at 1715.946 kb on + strand, within DVU1632 at 1715.946 kb on + strand, within DVU1632 at 1715.954 kb on - strand, within DVU1632 at 1715.954 kb on - strand, within DVU1632 at 1715.954 kb on - strand, within DVU1632 at 1716.121 kb on - strand, within DVU1632 at 1716.184 kb on + strand, within DVU1632 at 1716.184 kb on + strand, within DVU1632 at 1716.395 kb on - strand, within DVU1633 at 1716.490 kb on - strand, within DVU1633 at 1716.811 kb on - strand at 1716.992 kb on - strand, within DVU1634 at 1717.171 kb on + strand, within DVU1634 at 1717.189 kb on - strand, within DVU1634 at 1717.338 kb on + strand, within DVU1634
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 1,715,900 + -0.3 1,715,946 + DVU1632 0.13 +1.0 1,715,946 + DVU1632 0.13 -0.7 1,715,954 - DVU1632 0.15 -1.4 1,715,954 - DVU1632 0.15 -1.3 1,715,954 - DVU1632 0.15 -0.5 1,716,121 - DVU1632 0.53 +0.0 1,716,184 + DVU1632 0.67 -0.2 1,716,184 + DVU1632 0.67 +0.6 1,716,395 - DVU1633 0.15 +0.0 1,716,490 - DVU1633 0.35 -0.6 1,716,811 - +0.3 1,716,992 - DVU1634 0.26 -0.6 1,717,171 + DVU1634 0.53 +0.0 1,717,189 - DVU1634 0.56 +0.0 1,717,338 + DVU1634 0.78 -0.6
Or see this region's nucleotide sequence