Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1620

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntgpmA and DVU1620 are separated by 4 nucleotidesDVU1620 and DVU1621 are separated by 101 nucleotidesDVU1621 and DORF12360 are separated by 145 nucleotides DVU1619: gpmA - phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (TIGR), at 1,703,251 to 1,704,786 gpmA DVU1620: DVU1620 - hypothetical protein (TIGR), at 1,704,791 to 1,705,033 DVU1620 DVU1621: DVU1621 - hypothetical protein (TIGR), at 1,705,135 to 1,705,557 DVU1621 DORF12360: DORF12360 - SEED: FIG00605053: hypothetical protein, at 1,705,703 to 1,706,176 DORF12360 Position (kb) 1704 1705 1706Strain fitness (log2 ratio) -2 -1 0 1 2at 1704.914 kb on + strand, within DVU1620at 1704.937 kb on + strand, within DVU1620at 1705.077 kb on + strandat 1705.193 kb on - strand, within DVU1621at 1705.337 kb on + strand, within DVU1621at 1705.566 kb on + strandat 1705.592 kb on + strandat 1705.713 kb on + strandat 1705.720 kb on + strandat 1705.720 kb on + strandat 1705.745 kb on - strandat 1705.762 kb on - strand, within DORF12360at 1705.824 kb on + strand, within DORF12360at 1705.910 kb on - strand, within DORF12360at 1705.944 kb on + strand, within DORF12360

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
remove
1,704,914 + DVU1620 0.51 +0.0
1,704,937 + DVU1620 0.60 -1.0
1,705,077 + -1.9
1,705,193 - DVU1621 0.14 -0.5
1,705,337 + DVU1621 0.48 -0.0
1,705,566 + +0.4
1,705,592 + -0.7
1,705,713 + -0.5
1,705,720 + +2.0
1,705,720 + -0.1
1,705,745 - +0.2
1,705,762 - DORF12360 0.12 -0.6
1,705,824 + DORF12360 0.26 +0.1
1,705,910 - DORF12360 0.44 -0.7
1,705,944 + DORF12360 0.51 +0.0

Or see this region's nucleotide sequence