Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1244

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntvacJhomolog and DVU1243 are separated by 8 nucleotidesDVU1243 and DVU1244 are separated by 3 nucleotidesDVU1244 and DVU1245 are separated by 108 nucleotidesDVU1245 and DVU1246 are separated by 11 nucleotides DVU1242: vacJhomolog - vacJ lipoprotein, putative (TIGR), at 1,329,456 to 1,330,277 vacJhomolog DVU1243: DVU1243 - conserved hypothetical protein (TIGR), at 1,330,286 to 1,330,918 DVU1243 DVU1244: DVU1244 - conserved hypothetical protein (TIGR), at 1,330,922 to 1,331,368 DVU1244 DVU1245: DVU1245 - ABC transporter, ATP-binding protein (TIGR), at 1,331,477 to 1,332,301 DVU1245 DVU1246: DVU1246 - membrane protein, putative (TIGR), at 1,332,313 to 1,333,116 DVU1246 Position (kb) 1330 1331 1332Strain fitness (log2 ratio) -1 0 1 2at 1330.202 kb on - strandat 1330.224 kb on + strandat 1330.231 kb on + strandat 1330.350 kb on + strand, within DVU1243at 1330.353 kb on - strand, within DVU1243at 1330.479 kb on + strand, within DVU1243at 1330.489 kb on + strand, within DVU1243at 1330.505 kb on + strand, within DVU1243at 1330.505 kb on + strand, within DVU1243at 1330.527 kb on + strand, within DVU1243at 1330.761 kb on + strand, within DVU1243at 1330.871 kb on + strandat 1330.890 kb on - strandat 1330.937 kb on - strandat 1331.092 kb on - strand, within DVU1244at 1331.114 kb on - strand, within DVU1244at 1331.250 kb on + strand, within DVU1244at 1331.280 kb on - strand, within DVU1244at 1331.320 kb on - strand, within DVU1244at 1331.380 kb on + strandat 1331.464 kb on - strandat 1331.609 kb on + strand, within DVU1245at 1331.676 kb on - strand, within DVU1245at 1331.776 kb on + strand, within DVU1245at 1331.908 kb on + strand, within DVU1245at 1331.916 kb on - strand, within DVU1245at 1331.916 kb on - strand, within DVU1245at 1332.151 kb on - strand, within DVU1245at 1332.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
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1,330,202 - -0.2
1,330,224 + -0.4
1,330,231 + -0.6
1,330,350 + DVU1243 0.10 -0.0
1,330,353 - DVU1243 0.11 -1.1
1,330,479 + DVU1243 0.30 -0.0
1,330,489 + DVU1243 0.32 -0.0
1,330,505 + DVU1243 0.35 -0.0
1,330,505 + DVU1243 0.35 -1.2
1,330,527 + DVU1243 0.38 -0.3
1,330,761 + DVU1243 0.75 -0.4
1,330,871 + +0.2
1,330,890 - +0.2
1,330,937 - -1.2
1,331,092 - DVU1244 0.38 -1.5
1,331,114 - DVU1244 0.43 -0.8
1,331,250 + DVU1244 0.73 +1.0
1,331,280 - DVU1244 0.80 -0.0
1,331,320 - DVU1244 0.89 -0.0
1,331,380 + -0.6
1,331,464 - -0.1
1,331,609 + DVU1245 0.16 -0.5
1,331,676 - DVU1245 0.24 +1.0
1,331,776 + DVU1245 0.36 -0.2
1,331,908 + DVU1245 0.52 +2.0
1,331,916 - DVU1245 0.53 -0.0
1,331,916 - DVU1245 0.53 -1.0
1,332,151 - DVU1245 0.82 -0.0
1,332,278 - -0.6

Or see this region's nucleotide sequence