Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt vacJhomolog and DVU1243 are separated by 8 nucleotides DVU1243 and DVU1244 are separated by 3 nucleotides DVU1244 and DVU1245 are separated by 108 nucleotides DVU1245 and DVU1246 are separated by 11 nucleotides
DVU1242: vacJhomolog - vacJ lipoprotein, putative (TIGR), at 1,329,456 to 1,330,277
vacJhomolog
DVU1243: DVU1243 - conserved hypothetical protein (TIGR), at 1,330,286 to 1,330,918
DVU1243
DVU1244: DVU1244 - conserved hypothetical protein (TIGR), at 1,330,922 to 1,331,368
DVU1244
DVU1245: DVU1245 - ABC transporter, ATP-binding protein (TIGR), at 1,331,477 to 1,332,301
DVU1245
DVU1246: DVU1246 - membrane protein, putative (TIGR), at 1,332,313 to 1,333,116
DVU1246
Position (kb)
1330
1331
1332 Strain fitness (log2 ratio)
-1
0
1
2 at 1330.202 kb on - strand at 1330.224 kb on + strand at 1330.231 kb on + strand at 1330.350 kb on + strand, within DVU1243 at 1330.353 kb on - strand, within DVU1243 at 1330.479 kb on + strand, within DVU1243 at 1330.489 kb on + strand, within DVU1243 at 1330.505 kb on + strand, within DVU1243 at 1330.505 kb on + strand, within DVU1243 at 1330.527 kb on + strand, within DVU1243 at 1330.761 kb on + strand, within DVU1243 at 1330.871 kb on + strand at 1330.890 kb on - strand at 1330.937 kb on - strand at 1331.092 kb on - strand, within DVU1244 at 1331.114 kb on - strand, within DVU1244 at 1331.250 kb on + strand, within DVU1244 at 1331.280 kb on - strand, within DVU1244 at 1331.320 kb on - strand, within DVU1244 at 1331.380 kb on + strand at 1331.464 kb on - strand at 1331.609 kb on + strand, within DVU1245 at 1331.676 kb on - strand, within DVU1245 at 1331.776 kb on + strand, within DVU1245 at 1331.908 kb on + strand, within DVU1245 at 1331.916 kb on - strand, within DVU1245 at 1331.916 kb on - strand, within DVU1245 at 1332.151 kb on - strand, within DVU1245 at 1332.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 1,330,202 - -0.2 1,330,224 + -0.4 1,330,231 + -0.6 1,330,350 + DVU1243 0.10 -0.0 1,330,353 - DVU1243 0.11 -1.1 1,330,479 + DVU1243 0.30 -0.0 1,330,489 + DVU1243 0.32 -0.0 1,330,505 + DVU1243 0.35 -0.0 1,330,505 + DVU1243 0.35 -1.2 1,330,527 + DVU1243 0.38 -0.3 1,330,761 + DVU1243 0.75 -0.4 1,330,871 + +0.2 1,330,890 - +0.2 1,330,937 - -1.2 1,331,092 - DVU1244 0.38 -1.5 1,331,114 - DVU1244 0.43 -0.8 1,331,250 + DVU1244 0.73 +1.0 1,331,280 - DVU1244 0.80 -0.0 1,331,320 - DVU1244 0.89 -0.0 1,331,380 + -0.6 1,331,464 - -0.1 1,331,609 + DVU1245 0.16 -0.5 1,331,676 - DVU1245 0.24 +1.0 1,331,776 + DVU1245 0.36 -0.2 1,331,908 + DVU1245 0.52 +2.0 1,331,916 - DVU1245 0.53 -0.0 1,331,916 - DVU1245 0.53 -1.0 1,332,151 - DVU1245 0.82 -0.0 1,332,278 - -0.6
Or see this region's nucleotide sequence