Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1092 and DVU1093 are separated by 189 nucleotides DVU1093 and argH are separated by 132 nucleotides
DVU1092: DVU1092 - sodium-dependent symporter family protein (TIGR), at 1,197,183 to 1,198,544
DVU1092
DVU1093: DVU1093 - HAD-superfamily hydrolase, subfamily IA, variant 3 (TIGR), at 1,198,734 to 1,199,264
DVU1093
DVU1094: argH - argininosuccinate lyase (TIGR), at 1,199,397 to 1,200,779
argH
Position (kb) 1198
1199
1200 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1197.771 kb on - strand, within DVU1092 at 1197.773 kb on + strand, within DVU1092 at 1197.773 kb on + strand, within DVU1092 at 1197.773 kb on + strand, within DVU1092 at 1197.773 kb on + strand, within DVU1092 at 1197.781 kb on - strand, within DVU1092 at 1197.789 kb on + strand, within DVU1092 at 1197.922 kb on - strand, within DVU1092 at 1197.925 kb on + strand, within DVU1092 at 1197.957 kb on + strand, within DVU1092 at 1197.971 kb on + strand, within DVU1092 at 1197.975 kb on + strand, within DVU1092 at 1197.998 kb on - strand, within DVU1092 at 1198.055 kb on + strand, within DVU1092 at 1198.108 kb on - strand, within DVU1092 at 1198.196 kb on + strand, within DVU1092 at 1198.219 kb on - strand, within DVU1092 at 1198.225 kb on - strand, within DVU1092 at 1198.241 kb on - strand, within DVU1092 at 1198.271 kb on + strand, within DVU1092 at 1198.271 kb on + strand, within DVU1092 at 1198.271 kb on + strand, within DVU1092 at 1198.430 kb on - strand at 1198.468 kb on - strand at 1198.503 kb on - strand at 1198.538 kb on + strand at 1198.663 kb on + strand at 1198.730 kb on - strand at 1198.786 kb on - strand at 1198.848 kb on - strand, within DVU1093 at 1198.927 kb on - strand, within DVU1093 at 1199.081 kb on - strand, within DVU1093 at 1199.211 kb on + strand, within DVU1093 at 1199.226 kb on - strand at 1199.294 kb on - strand at 1199.328 kb on - strand at 1199.572 kb on + strand, within argH at 1199.611 kb on + strand, within argH at 1199.621 kb on + strand, within argH at 1199.716 kb on + strand, within argH at 1199.804 kb on - strand, within argH at 1199.820 kb on + strand, within argH at 1199.855 kb on + strand, within argH at 1199.867 kb on + strand, within argH at 1199.880 kb on - strand, within argH at 1200.010 kb on - strand, within argH at 1200.055 kb on + strand, within argH
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 1,197,771 - DVU1092 0.43 +2.0 1,197,773 + DVU1092 0.43 -0.3 1,197,773 + DVU1092 0.43 -0.4 1,197,773 + DVU1092 0.43 +0.3 1,197,773 + DVU1092 0.43 -0.8 1,197,781 - DVU1092 0.44 -0.5 1,197,789 + DVU1092 0.44 +1.2 1,197,922 - DVU1092 0.54 -0.3 1,197,925 + DVU1092 0.54 -0.3 1,197,957 + DVU1092 0.57 -0.5 1,197,971 + DVU1092 0.58 -0.6 1,197,975 + DVU1092 0.58 -0.7 1,197,998 - DVU1092 0.60 -0.1 1,198,055 + DVU1092 0.64 +0.2 1,198,108 - DVU1092 0.68 -1.0 1,198,196 + DVU1092 0.74 -0.4 1,198,219 - DVU1092 0.76 -0.2 1,198,225 - DVU1092 0.77 -0.5 1,198,241 - DVU1092 0.78 -0.4 1,198,271 + DVU1092 0.80 -0.1 1,198,271 + DVU1092 0.80 -0.0 1,198,271 + DVU1092 0.80 +0.1 1,198,430 - -0.4 1,198,468 - +0.5 1,198,503 - +0.1 1,198,538 + -0.9 1,198,663 + -0.7 1,198,730 - -0.7 1,198,786 - -1.0 1,198,848 - DVU1093 0.21 -0.8 1,198,927 - DVU1093 0.36 -0.4 1,199,081 - DVU1093 0.65 -1.0 1,199,211 + DVU1093 0.90 -1.0 1,199,226 - +1.0 1,199,294 - -0.6 1,199,328 - -0.5 1,199,572 + argH DVU1094 0.13 -3.5 1,199,611 + argH DVU1094 0.15 -1.7 1,199,621 + argH DVU1094 0.16 -1.4 1,199,716 + argH DVU1094 0.23 -2.8 1,199,804 - argH DVU1094 0.29 -3.3 1,199,820 + argH DVU1094 0.31 -0.6 1,199,855 + argH DVU1094 0.33 -1.9 1,199,867 + argH DVU1094 0.34 -4.1 1,199,880 - argH DVU1094 0.35 -0.0 1,200,010 - argH DVU1094 0.44 -0.6 1,200,055 + argH DVU1094 0.48 -0.9
Or see this region's nucleotide sequence