Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1032

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisC and DVU1030 are separated by 266 nucleotidesDVU1030 and DVU1032 are separated by 260 nucleotidesDVU1032 and DORF32294 are separated by 59 nucleotidesDORF32294 and cinA are separated by 250 nucleotides DVU1029: hisC - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data), at 1,133,410 to 1,134,531 hisC DVU1030: DVU1030 - universal stress protein family (TIGR), at 1,134,798 to 1,135,241 DVU1030 DVU1032: DVU1032 - hypothetical protein (TIGR), at 1,135,502 to 1,136,011 DVU1032 DORF32294: DORF32294 - no description, at 1,136,071 to 1,136,193 DORF32294 DVU1033: cinA - competence/damage-inducible protein CinA protein, truncation (TIGR), at 1,136,444 to 1,136,938 cinA Position (kb) 1135 1136 1137Strain fitness (log2 ratio) -2 -1 0 1 2at 1134.535 kb on - strandat 1134.680 kb on - strandat 1134.685 kb on + strandat 1134.695 kb on + strandat 1134.703 kb on - strandat 1134.703 kb on - strandat 1134.718 kb on + strandat 1134.774 kb on + strandat 1134.922 kb on + strand, within DVU1030at 1134.925 kb on + strand, within DVU1030at 1134.976 kb on + strand, within DVU1030at 1135.070 kb on + strand, within DVU1030at 1135.186 kb on + strand, within DVU1030at 1135.484 kb on - strandat 1135.580 kb on - strand, within DVU1032at 1135.626 kb on + strand, within DVU1032at 1135.674 kb on - strand, within DVU1032at 1135.674 kb on - strand, within DVU1032at 1135.698 kb on + strand, within DVU1032at 1135.722 kb on - strand, within DVU1032at 1136.101 kb on + strand, within DORF32294at 1136.101 kb on + strand, within DORF32294at 1136.103 kb on + strand, within DORF32294at 1136.124 kb on - strand, within DORF32294at 1136.134 kb on - strand, within DORF32294at 1136.142 kb on + strand, within DORF32294at 1136.158 kb on - strand, within DORF32294at 1136.197 kb on - strandat 1136.391 kb on - strandat 1136.674 kb on - strand, within cinAat 1136.995 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
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1,134,535 - -2.3
1,134,680 - -1.5
1,134,685 + -0.0
1,134,695 + -0.7
1,134,703 - -0.6
1,134,703 - -0.2
1,134,718 + -0.0
1,134,774 + -0.0
1,134,922 + DVU1030 0.28 -0.6
1,134,925 + DVU1030 0.29 -0.3
1,134,976 + DVU1030 0.40 -0.0
1,135,070 + DVU1030 0.61 +0.1
1,135,186 + DVU1030 0.87 +0.4
1,135,484 - -0.8
1,135,580 - DVU1032 0.15 -1.6
1,135,626 + DVU1032 0.24 -1.9
1,135,674 - DVU1032 0.34 -1.7
1,135,674 - DVU1032 0.34 -0.0
1,135,698 + DVU1032 0.38 +1.0
1,135,722 - DVU1032 0.43 -1.4
1,136,101 + DORF32294 0.24 -0.2
1,136,101 + DORF32294 0.24 +1.0
1,136,103 + DORF32294 0.26 +0.4
1,136,124 - DORF32294 0.43 +2.2
1,136,134 - DORF32294 0.51 -0.1
1,136,142 + DORF32294 0.58 +0.1
1,136,158 - DORF32294 0.71 -0.8
1,136,197 - -0.2
1,136,391 - -1.4
1,136,674 - cinA DVU1033 0.46 -0.4
1,136,995 + +0.5

Or see this region's nucleotide sequence