Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hisC and DVU1030 are separated by 266 nucleotides DVU1030 and DVU1032 are separated by 260 nucleotides DVU1032 and DORF32294 are separated by 59 nucleotides DORF32294 and cinA are separated by 250 nucleotides
DVU1029: hisC - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) , at 1,133,410 to 1,134,531
hisC
DVU1030: DVU1030 - universal stress protein family (TIGR), at 1,134,798 to 1,135,241
DVU1030
DVU1032: DVU1032 - hypothetical protein (TIGR), at 1,135,502 to 1,136,011
DVU1032
DORF32294: DORF32294 - no description, at 1,136,071 to 1,136,193
DORF32294
DVU1033: cinA - competence/damage-inducible protein CinA protein, truncation (TIGR), at 1,136,444 to 1,136,938
cinA
Position (kb)
1135
1136
1137 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1134.535 kb on - strand at 1134.680 kb on - strand at 1134.685 kb on + strand at 1134.695 kb on + strand at 1134.703 kb on - strand at 1134.703 kb on - strand at 1134.718 kb on + strand at 1134.774 kb on + strand at 1134.922 kb on + strand, within DVU1030 at 1134.925 kb on + strand, within DVU1030 at 1134.976 kb on + strand, within DVU1030 at 1135.070 kb on + strand, within DVU1030 at 1135.186 kb on + strand, within DVU1030 at 1135.484 kb on - strand at 1135.580 kb on - strand, within DVU1032 at 1135.626 kb on + strand, within DVU1032 at 1135.674 kb on - strand, within DVU1032 at 1135.674 kb on - strand, within DVU1032 at 1135.698 kb on + strand, within DVU1032 at 1135.722 kb on - strand, within DVU1032 at 1136.101 kb on + strand, within DORF32294 at 1136.101 kb on + strand, within DORF32294 at 1136.103 kb on + strand, within DORF32294 at 1136.124 kb on - strand, within DORF32294 at 1136.134 kb on - strand, within DORF32294 at 1136.142 kb on + strand, within DORF32294 at 1136.158 kb on - strand, within DORF32294 at 1136.197 kb on - strand at 1136.391 kb on - strand at 1136.674 kb on - strand, within cinA at 1136.995 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 1,134,535 - -2.3 1,134,680 - -1.5 1,134,685 + -0.0 1,134,695 + -0.7 1,134,703 - -0.6 1,134,703 - -0.2 1,134,718 + -0.0 1,134,774 + -0.0 1,134,922 + DVU1030 0.28 -0.6 1,134,925 + DVU1030 0.29 -0.3 1,134,976 + DVU1030 0.40 -0.0 1,135,070 + DVU1030 0.61 +0.1 1,135,186 + DVU1030 0.87 +0.4 1,135,484 - -0.8 1,135,580 - DVU1032 0.15 -1.6 1,135,626 + DVU1032 0.24 -1.9 1,135,674 - DVU1032 0.34 -1.7 1,135,674 - DVU1032 0.34 -0.0 1,135,698 + DVU1032 0.38 +1.0 1,135,722 - DVU1032 0.43 -1.4 1,136,101 + DORF32294 0.24 -0.2 1,136,101 + DORF32294 0.24 +1.0 1,136,103 + DORF32294 0.26 +0.4 1,136,124 - DORF32294 0.43 +2.2 1,136,134 - DORF32294 0.51 -0.1 1,136,142 + DORF32294 0.58 +0.1 1,136,158 - DORF32294 0.71 -0.8 1,136,197 - -0.2 1,136,391 - -1.4 1,136,674 - cinA DVU1033 0.46 -0.4 1,136,995 + +0.5
Or see this region's nucleotide sequence