Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0973

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0972 and DVU0973 overlap by 4 nucleotidesDVU0973 and DVU0974 are separated by 98 nucleotidesDVU0974 and DVU0975 are separated by 32 nucleotides DVU0972: DVU0972 - HD domain protein (TIGR), at 1,068,370 to 1,069,635 DVU0972 DVU0973: DVU0973 - 4-hydroxybenzoate octaprenyltransferase, putative (TIGR), at 1,069,632 to 1,070,501 DVU0973 DVU0974: DVU0974 - hypothetical protein (TIGR), at 1,070,600 to 1,070,938 DVU0974 DVU0975: DVU0975 - conserved hypothetical protein (TIGR), at 1,070,971 to 1,071,531 DVU0975 Position (kb) 1069 1070 1071Strain fitness (log2 ratio) -2 -1 0 1 2at 1068.687 kb on + strand, within DVU0972at 1068.695 kb on - strand, within DVU0972at 1068.767 kb on + strand, within DVU0972at 1068.767 kb on + strand, within DVU0972at 1068.783 kb on - strand, within DVU0972at 1068.858 kb on - strand, within DVU0972at 1068.860 kb on + strand, within DVU0972at 1068.948 kb on - strand, within DVU0972at 1068.948 kb on - strand, within DVU0972at 1069.105 kb on + strand, within DVU0972at 1069.214 kb on + strand, within DVU0972at 1069.372 kb on - strand, within DVU0972at 1069.374 kb on - strand, within DVU0972at 1069.605 kb on - strandat 1069.620 kb on + strandat 1070.405 kb on + strand, within DVU0973at 1070.552 kb on + strandat 1070.607 kb on + strandat 1070.615 kb on - strandat 1070.655 kb on - strand, within DVU0974at 1070.896 kb on + strand, within DVU0974at 1070.897 kb on - strand, within DVU0974at 1071.027 kb on - strand, within DVU0975at 1071.066 kb on - strand, within DVU0975at 1071.122 kb on + strand, within DVU0975at 1071.122 kb on + strand, within DVU0975at 1071.414 kb on + strand, within DVU0975

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
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1,068,687 + DVU0972 0.25 +0.2
1,068,695 - DVU0972 0.26 +0.8
1,068,767 + DVU0972 0.31 -1.4
1,068,767 + DVU0972 0.31 -0.5
1,068,783 - DVU0972 0.33 -0.4
1,068,858 - DVU0972 0.39 +0.0
1,068,860 + DVU0972 0.39 -1.4
1,068,948 - DVU0972 0.46 -0.1
1,068,948 - DVU0972 0.46 -0.0
1,069,105 + DVU0972 0.58 +1.0
1,069,214 + DVU0972 0.67 -0.2
1,069,372 - DVU0972 0.79 -0.2
1,069,374 - DVU0972 0.79 -0.5
1,069,605 - -0.2
1,069,620 + -0.3
1,070,405 + DVU0973 0.89 -2.5
1,070,552 + -0.0
1,070,607 + -0.4
1,070,615 - -0.4
1,070,655 - DVU0974 0.16 -0.7
1,070,896 + DVU0974 0.87 -0.1
1,070,897 - DVU0974 0.88 -0.2
1,071,027 - DVU0975 0.10 -0.6
1,071,066 - DVU0975 0.17 -1.4
1,071,122 + DVU0975 0.27 +0.9
1,071,122 + DVU0975 0.27 +1.9
1,071,414 + DVU0975 0.79 +0.4

Or see this region's nucleotide sequence