Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0908

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0907 and DVU0908 are separated by 11 nucleotidesDVU0908 and DVU0909 are separated by 165 nucleotidesDVU0909 and fliM are separated by 135 nucleotides DVU0907: DVU0907 - conserved domain protein (TIGR), at 998,948 to 1,001,887 DVU0907 DVU0908: DVU0908 - ATP-dependent reduction of co(II)balamin (from data), at 1,001,899 to 1,003,530 DVU0908 DVU0909: DVU0909 - hypothetical protein (TIGR), at 1,003,696 to 1,004,091 DVU0909 DVU0910: fliM - flagellar motor switch protein FliM (TIGR), at 1,004,227 to 1,005,207 fliM Position (kb) 1001 1002 1003 1004Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1000.936 kb on - strand, within DVU0907at 1000.993 kb on + strand, within DVU0907at 1001.008 kb on - strand, within DVU0907at 1001.139 kb on + strand, within DVU0907at 1001.142 kb on - strand, within DVU0907at 1001.201 kb on - strand, within DVU0907at 1001.269 kb on - strand, within DVU0907at 1001.269 kb on - strand, within DVU0907at 1001.269 kb on - strand, within DVU0907at 1001.326 kb on - strand, within DVU0907at 1001.397 kb on + strand, within DVU0907at 1001.407 kb on - strand, within DVU0907at 1001.458 kb on - strand, within DVU0907at 1001.493 kb on + strand, within DVU0907at 1001.506 kb on - strand, within DVU0907at 1001.547 kb on + strand, within DVU0907at 1001.547 kb on + strand, within DVU0907at 1001.557 kb on + strand, within DVU0907at 1001.605 kb on + strandat 1001.605 kb on + strandat 1001.605 kb on + strandat 1001.610 kb on + strandat 1001.672 kb on - strandat 1001.777 kb on - strandat 1001.793 kb on + strandat 1001.829 kb on + strandat 1001.972 kb on - strandat 1001.997 kb on - strandat 1002.047 kb on + strandat 1002.055 kb on - strandat 1002.087 kb on + strand, within DVU0908at 1002.102 kb on - strand, within DVU0908at 1002.109 kb on - strand, within DVU0908at 1002.183 kb on - strand, within DVU0908at 1002.319 kb on + strand, within DVU0908at 1002.319 kb on + strand, within DVU0908at 1002.326 kb on + strand, within DVU0908at 1002.327 kb on - strand, within DVU0908at 1002.529 kb on - strand, within DVU0908at 1002.561 kb on + strand, within DVU0908at 1002.562 kb on - strand, within DVU0908at 1002.593 kb on - strand, within DVU0908at 1002.610 kb on + strand, within DVU0908at 1002.620 kb on + strand, within DVU0908at 1002.670 kb on - strand, within DVU0908at 1002.680 kb on - strand, within DVU0908at 1002.680 kb on - strand, within DVU0908at 1002.701 kb on + strand, within DVU0908at 1002.709 kb on - strand, within DVU0908at 1002.709 kb on - strand, within DVU0908at 1002.720 kb on + strand, within DVU0908at 1002.762 kb on - strand, within DVU0908at 1002.807 kb on - strand, within DVU0908at 1002.955 kb on - strand, within DVU0908at 1003.129 kb on + strand, within DVU0908at 1003.152 kb on + strand, within DVU0908at 1003.190 kb on - strand, within DVU0908at 1003.258 kb on + strand, within DVU0908at 1003.324 kb on + strand, within DVU0908at 1003.350 kb on + strand, within DVU0908at 1003.350 kb on + strand, within DVU0908at 1003.429 kb on + strandat 1003.552 kb on + strandat 1003.640 kb on - strandat 1003.786 kb on + strand, within DVU0909at 1003.786 kb on + strand, within DVU0909at 1003.791 kb on + strand, within DVU0909at 1003.794 kb on - strand, within DVU0909at 1003.940 kb on - strand, within DVU0909at 1004.050 kb on - strand, within DVU0909at 1004.109 kb on + strandat 1004.117 kb on + strandat 1004.177 kb on - strandat 1004.335 kb on + strand, within fliMat 1004.452 kb on + strand, within fliM

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
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1,000,936 - DVU0907 0.68 -0.7
1,000,993 + DVU0907 0.70 +0.2
1,001,008 - DVU0907 0.70 -1.1
1,001,139 + DVU0907 0.75 -0.2
1,001,142 - DVU0907 0.75 +0.2
1,001,201 - DVU0907 0.77 -1.4
1,001,269 - DVU0907 0.79 -0.8
1,001,269 - DVU0907 0.79 -0.5
1,001,269 - DVU0907 0.79 -0.5
1,001,326 - DVU0907 0.81 -0.9
1,001,397 + DVU0907 0.83 -0.8
1,001,407 - DVU0907 0.84 -0.1
1,001,458 - DVU0907 0.85 +1.0
1,001,493 + DVU0907 0.87 -0.5
1,001,506 - DVU0907 0.87 -0.3
1,001,547 + DVU0907 0.88 -0.6
1,001,547 + DVU0907 0.88 +0.9
1,001,557 + DVU0907 0.89 -0.8
1,001,605 + +1.9
1,001,605 + +0.8
1,001,605 + -0.2
1,001,610 + +0.9
1,001,672 - -0.5
1,001,777 - -0.5
1,001,793 + -0.4
1,001,829 + +0.0
1,001,972 - -1.1
1,001,997 - -2.3
1,002,047 + +0.9
1,002,055 - -2.5
1,002,087 + DVU0908 0.12 -3.1
1,002,102 - DVU0908 0.12 -3.0
1,002,109 - DVU0908 0.13 +0.9
1,002,183 - DVU0908 0.17 -0.8
1,002,319 + DVU0908 0.26 -0.1
1,002,319 + DVU0908 0.26 -2.4
1,002,326 + DVU0908 0.26 -2.9
1,002,327 - DVU0908 0.26 +0.9
1,002,529 - DVU0908 0.39 -1.9
1,002,561 + DVU0908 0.41 -1.8
1,002,562 - DVU0908 0.41 -1.9
1,002,593 - DVU0908 0.43 -1.1
1,002,610 + DVU0908 0.44 -1.6
1,002,620 + DVU0908 0.44 +0.9
1,002,670 - DVU0908 0.47 +0.4
1,002,680 - DVU0908 0.48 -1.1
1,002,680 - DVU0908 0.48 +0.9
1,002,701 + DVU0908 0.49 +1.5
1,002,709 - DVU0908 0.50 -2.9
1,002,709 - DVU0908 0.50 -1.6
1,002,720 + DVU0908 0.50 -2.9
1,002,762 - DVU0908 0.53 -2.7
1,002,807 - DVU0908 0.56 -2.5
1,002,955 - DVU0908 0.65 -2.1
1,003,129 + DVU0908 0.75 -2.4
1,003,152 + DVU0908 0.77 -0.6
1,003,190 - DVU0908 0.79 -2.8
1,003,258 + DVU0908 0.83 -2.8
1,003,324 + DVU0908 0.87 -4.1
1,003,350 + DVU0908 0.89 -1.3
1,003,350 + DVU0908 0.89 +0.9
1,003,429 + -1.2
1,003,552 + +0.2
1,003,640 - -0.6
1,003,786 + DVU0909 0.23 -0.4
1,003,786 + DVU0909 0.23 -0.6
1,003,791 + DVU0909 0.24 +0.9
1,003,794 - DVU0909 0.25 +0.9
1,003,940 - DVU0909 0.62 +0.7
1,004,050 - DVU0909 0.89 -0.1
1,004,109 + +1.5
1,004,117 + -2.5
1,004,177 - -0.4
1,004,335 + fliM DVU0910 0.11 +1.1
1,004,452 + fliM DVU0910 0.23 +0.5

Or see this region's nucleotide sequence