Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0907 and DVU0908 are separated by 11 nucleotides DVU0908 and DVU0909 are separated by 165 nucleotides DVU0909 and fliM are separated by 135 nucleotides
DVU0907: DVU0907 - conserved domain protein (TIGR), at 998,948 to 1,001,887
DVU0907
DVU0908: DVU0908 - ATP-dependent reduction of co(II)balamin (from data) , at 1,001,899 to 1,003,530
DVU0908
DVU0909: DVU0909 - hypothetical protein (TIGR), at 1,003,696 to 1,004,091
DVU0909
DVU0910: fliM - flagellar motor switch protein FliM (TIGR), at 1,004,227 to 1,005,207
fliM
Position (kb)
1001
1002
1003
1004 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1000.936 kb on - strand, within DVU0907 at 1000.993 kb on + strand, within DVU0907 at 1001.008 kb on - strand, within DVU0907 at 1001.139 kb on + strand, within DVU0907 at 1001.142 kb on - strand, within DVU0907 at 1001.201 kb on - strand, within DVU0907 at 1001.269 kb on - strand, within DVU0907 at 1001.269 kb on - strand, within DVU0907 at 1001.269 kb on - strand, within DVU0907 at 1001.326 kb on - strand, within DVU0907 at 1001.397 kb on + strand, within DVU0907 at 1001.407 kb on - strand, within DVU0907 at 1001.458 kb on - strand, within DVU0907 at 1001.493 kb on + strand, within DVU0907 at 1001.506 kb on - strand, within DVU0907 at 1001.547 kb on + strand, within DVU0907 at 1001.547 kb on + strand, within DVU0907 at 1001.557 kb on + strand, within DVU0907 at 1001.605 kb on + strand at 1001.605 kb on + strand at 1001.605 kb on + strand at 1001.610 kb on + strand at 1001.672 kb on - strand at 1001.777 kb on - strand at 1001.793 kb on + strand at 1001.829 kb on + strand at 1001.972 kb on - strand at 1001.997 kb on - strand at 1002.047 kb on + strand at 1002.055 kb on - strand at 1002.087 kb on + strand, within DVU0908 at 1002.102 kb on - strand, within DVU0908 at 1002.109 kb on - strand, within DVU0908 at 1002.183 kb on - strand, within DVU0908 at 1002.319 kb on + strand, within DVU0908 at 1002.319 kb on + strand, within DVU0908 at 1002.326 kb on + strand, within DVU0908 at 1002.327 kb on - strand, within DVU0908 at 1002.529 kb on - strand, within DVU0908 at 1002.561 kb on + strand, within DVU0908 at 1002.562 kb on - strand, within DVU0908 at 1002.593 kb on - strand, within DVU0908 at 1002.610 kb on + strand, within DVU0908 at 1002.620 kb on + strand, within DVU0908 at 1002.670 kb on - strand, within DVU0908 at 1002.680 kb on - strand, within DVU0908 at 1002.680 kb on - strand, within DVU0908 at 1002.701 kb on + strand, within DVU0908 at 1002.709 kb on - strand, within DVU0908 at 1002.709 kb on - strand, within DVU0908 at 1002.720 kb on + strand, within DVU0908 at 1002.762 kb on - strand, within DVU0908 at 1002.807 kb on - strand, within DVU0908 at 1002.955 kb on - strand, within DVU0908 at 1003.129 kb on + strand, within DVU0908 at 1003.152 kb on + strand, within DVU0908 at 1003.190 kb on - strand, within DVU0908 at 1003.258 kb on + strand, within DVU0908 at 1003.324 kb on + strand, within DVU0908 at 1003.350 kb on + strand, within DVU0908 at 1003.350 kb on + strand, within DVU0908 at 1003.429 kb on + strand at 1003.552 kb on + strand at 1003.640 kb on - strand at 1003.786 kb on + strand, within DVU0909 at 1003.786 kb on + strand, within DVU0909 at 1003.791 kb on + strand, within DVU0909 at 1003.794 kb on - strand, within DVU0909 at 1003.940 kb on - strand, within DVU0909 at 1004.050 kb on - strand, within DVU0909 at 1004.109 kb on + strand at 1004.117 kb on + strand at 1004.177 kb on - strand at 1004.335 kb on + strand, within fliM at 1004.452 kb on + strand, within fliM
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 1,000,936 - DVU0907 0.68 -0.7 1,000,993 + DVU0907 0.70 +0.2 1,001,008 - DVU0907 0.70 -1.1 1,001,139 + DVU0907 0.75 -0.2 1,001,142 - DVU0907 0.75 +0.2 1,001,201 - DVU0907 0.77 -1.4 1,001,269 - DVU0907 0.79 -0.8 1,001,269 - DVU0907 0.79 -0.5 1,001,269 - DVU0907 0.79 -0.5 1,001,326 - DVU0907 0.81 -0.9 1,001,397 + DVU0907 0.83 -0.8 1,001,407 - DVU0907 0.84 -0.1 1,001,458 - DVU0907 0.85 +1.0 1,001,493 + DVU0907 0.87 -0.5 1,001,506 - DVU0907 0.87 -0.3 1,001,547 + DVU0907 0.88 -0.6 1,001,547 + DVU0907 0.88 +0.9 1,001,557 + DVU0907 0.89 -0.8 1,001,605 + +1.9 1,001,605 + +0.8 1,001,605 + -0.2 1,001,610 + +0.9 1,001,672 - -0.5 1,001,777 - -0.5 1,001,793 + -0.4 1,001,829 + +0.0 1,001,972 - -1.1 1,001,997 - -2.3 1,002,047 + +0.9 1,002,055 - -2.5 1,002,087 + DVU0908 0.12 -3.1 1,002,102 - DVU0908 0.12 -3.0 1,002,109 - DVU0908 0.13 +0.9 1,002,183 - DVU0908 0.17 -0.8 1,002,319 + DVU0908 0.26 -0.1 1,002,319 + DVU0908 0.26 -2.4 1,002,326 + DVU0908 0.26 -2.9 1,002,327 - DVU0908 0.26 +0.9 1,002,529 - DVU0908 0.39 -1.9 1,002,561 + DVU0908 0.41 -1.8 1,002,562 - DVU0908 0.41 -1.9 1,002,593 - DVU0908 0.43 -1.1 1,002,610 + DVU0908 0.44 -1.6 1,002,620 + DVU0908 0.44 +0.9 1,002,670 - DVU0908 0.47 +0.4 1,002,680 - DVU0908 0.48 -1.1 1,002,680 - DVU0908 0.48 +0.9 1,002,701 + DVU0908 0.49 +1.5 1,002,709 - DVU0908 0.50 -2.9 1,002,709 - DVU0908 0.50 -1.6 1,002,720 + DVU0908 0.50 -2.9 1,002,762 - DVU0908 0.53 -2.7 1,002,807 - DVU0908 0.56 -2.5 1,002,955 - DVU0908 0.65 -2.1 1,003,129 + DVU0908 0.75 -2.4 1,003,152 + DVU0908 0.77 -0.6 1,003,190 - DVU0908 0.79 -2.8 1,003,258 + DVU0908 0.83 -2.8 1,003,324 + DVU0908 0.87 -4.1 1,003,350 + DVU0908 0.89 -1.3 1,003,350 + DVU0908 0.89 +0.9 1,003,429 + -1.2 1,003,552 + +0.2 1,003,640 - -0.6 1,003,786 + DVU0909 0.23 -0.4 1,003,786 + DVU0909 0.23 -0.6 1,003,791 + DVU0909 0.24 +0.9 1,003,794 - DVU0909 0.25 +0.9 1,003,940 - DVU0909 0.62 +0.7 1,004,050 - DVU0909 0.89 -0.1 1,004,109 + +1.5 1,004,117 + -2.5 1,004,177 - -0.4 1,004,335 + fliM DVU0910 0.11 +1.1 1,004,452 + fliM DVU0910 0.23 +0.5
Or see this region's nucleotide sequence