Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DORF7930 and DVU0880 are separated by 13 nucleotides DVU0880 and fusA are separated by 494 nucleotides fusA and DVU0882 are separated by 205 nucleotides DVU0882 and nrdH are separated by 273 nucleotides
DORF7930: DORF7930 - no description, at 970,544 to 970,678
DORF7930
DVU0880: DVU0880 - hypothetical protein (TIGR), at 970,692 to 970,976
DVU0880
DVU0881: fusA - translation elongation factor G, putative (TIGR), at 971,471 to 973,537
fusA
DVU0882: DVU0882 - hypothetical protein (TIGR), at 973,743 to 974,207
DVU0882
DVU0883: nrdH - glutaredoxin, putative (TIGR), at 974,481 to 974,738
nrdH
Position (kb) 971
972
973
974 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 970.538 kb on + strand at 970.541 kb on - strand at 970.601 kb on - strand, within DORF7930 at 970.608 kb on - strand, within DORF7930 at 970.753 kb on + strand, within DVU0880 at 970.829 kb on + strand, within DVU0880 at 970.860 kb on + strand, within DVU0880 at 970.890 kb on - strand, within DVU0880 at 970.890 kb on - strand, within DVU0880 at 970.900 kb on - strand, within DVU0880 at 970.938 kb on - strand, within DVU0880 at 970.975 kb on + strand at 971.123 kb on + strand at 971.128 kb on - strand at 971.133 kb on - strand at 971.269 kb on + strand at 971.269 kb on + strand at 971.335 kb on + strand at 971.343 kb on - strand at 971.349 kb on + strand at 971.417 kb on + strand at 971.454 kb on + strand at 971.462 kb on - strand at 971.497 kb on + strand at 971.510 kb on - strand at 971.554 kb on - strand at 971.593 kb on + strand at 971.601 kb on - strand at 971.837 kb on + strand, within fusA at 971.847 kb on - strand, within fusA at 971.847 kb on - strand, within fusA at 971.897 kb on - strand, within fusA at 971.910 kb on - strand, within fusA at 971.934 kb on + strand, within fusA at 971.950 kb on + strand, within fusA at 971.973 kb on - strand, within fusA at 971.996 kb on + strand, within fusA at 972.004 kb on - strand, within fusA at 972.004 kb on - strand, within fusA at 972.005 kb on - strand, within fusA at 972.154 kb on - strand, within fusA at 972.250 kb on + strand, within fusA at 972.251 kb on + strand, within fusA at 972.264 kb on - strand, within fusA at 972.264 kb on - strand, within fusA at 972.285 kb on - strand, within fusA at 972.297 kb on + strand, within fusA at 972.307 kb on + strand, within fusA at 972.338 kb on + strand, within fusA at 972.408 kb on - strand, within fusA at 972.408 kb on - strand, within fusA at 972.547 kb on + strand, within fusA at 972.547 kb on - strand, within fusA at 972.547 kb on - strand, within fusA at 972.588 kb on + strand, within fusA at 972.617 kb on - strand, within fusA at 972.646 kb on - strand, within fusA at 972.657 kb on + strand, within fusA at 972.701 kb on + strand, within fusA at 972.701 kb on + strand, within fusA at 972.701 kb on + strand, within fusA at 972.709 kb on - strand, within fusA at 972.709 kb on - strand, within fusA at 972.709 kb on - strand, within fusA at 972.719 kb on - strand, within fusA at 972.758 kb on - strand, within fusA at 972.803 kb on + strand, within fusA at 972.810 kb on + strand, within fusA at 972.810 kb on + strand, within fusA at 972.810 kb on + strand, within fusA at 972.811 kb on - strand, within fusA at 972.818 kb on - strand, within fusA at 972.818 kb on - strand, within fusA at 972.818 kb on - strand, within fusA at 972.818 kb on - strand, within fusA at 972.845 kb on + strand, within fusA at 972.899 kb on + strand, within fusA at 973.023 kb on + strand, within fusA at 973.058 kb on + strand, within fusA at 973.068 kb on + strand, within fusA at 973.179 kb on + strand, within fusA at 973.243 kb on + strand, within fusA at 973.346 kb on - strand at 973.386 kb on - strand at 973.386 kb on - strand at 973.389 kb on + strand at 973.398 kb on - strand at 973.472 kb on + strand at 973.472 kb on + strand at 973.520 kb on + strand at 973.560 kb on - strand at 973.707 kb on - strand at 973.722 kb on + strand at 973.854 kb on + strand, within DVU0882 at 973.892 kb on - strand, within DVU0882 at 973.936 kb on - strand, within DVU0882 at 973.999 kb on + strand, within DVU0882 at 974.000 kb on + strand, within DVU0882 at 974.062 kb on - strand, within DVU0882 at 974.086 kb on + strand, within DVU0882 at 974.091 kb on + strand, within DVU0882 at 974.107 kb on + strand, within DVU0882 at 974.115 kb on - strand, within DVU0882 at 974.117 kb on + strand, within DVU0882 at 974.146 kb on - strand, within DVU0882 at 974.204 kb on - strand at 974.235 kb on - strand at 974.267 kb on + strand at 974.321 kb on - strand at 974.368 kb on + strand at 974.375 kb on + strand at 974.404 kb on - strand at 974.407 kb on + strand at 974.407 kb on + strand at 974.513 kb on + strand, within nrdH at 974.519 kb on - strand, within nrdH at 974.521 kb on - strand, within nrdH
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 970,538 + -0.2 970,541 - -0.4 970,601 - DORF7930 0.42 +0.9 970,608 - DORF7930 0.47 -0.7 970,753 + DVU0880 0.21 -0.3 970,829 + DVU0880 0.48 +0.4 970,860 + DVU0880 0.59 -1.4 970,890 - DVU0880 0.69 -0.3 970,890 - DVU0880 0.69 +0.9 970,900 - DVU0880 0.73 -0.5 970,938 - DVU0880 0.86 -0.7 970,975 + -1.6 971,123 + +0.8 971,128 - -0.0 971,133 - -0.5 971,269 + +0.1 971,269 + -0.9 971,335 + +0.1 971,343 - -0.6 971,349 + +0.3 971,417 + -0.2 971,454 + +0.2 971,462 - +0.3 971,497 + -0.9 971,510 - +0.9 971,554 - -0.8 971,593 + -1.5 971,601 - -0.5 971,837 + fusA DVU0881 0.18 -0.5 971,847 - fusA DVU0881 0.18 -0.8 971,847 - fusA DVU0881 0.18 -1.3 971,897 - fusA DVU0881 0.21 -0.6 971,910 - fusA DVU0881 0.21 -1.7 971,934 + fusA DVU0881 0.22 -0.5 971,950 + fusA DVU0881 0.23 -1.0 971,973 - fusA DVU0881 0.24 -0.1 971,996 + fusA DVU0881 0.25 -0.6 972,004 - fusA DVU0881 0.26 -1.1 972,004 - fusA DVU0881 0.26 +0.9 972,005 - fusA DVU0881 0.26 -1.1 972,154 - fusA DVU0881 0.33 -0.1 972,250 + fusA DVU0881 0.38 -1.1 972,251 + fusA DVU0881 0.38 -1.6 972,264 - fusA DVU0881 0.38 -0.5 972,264 - fusA DVU0881 0.38 -1.5 972,285 - fusA DVU0881 0.39 -1.0 972,297 + fusA DVU0881 0.40 +1.9 972,307 + fusA DVU0881 0.40 -1.3 972,338 + fusA DVU0881 0.42 +0.9 972,408 - fusA DVU0881 0.45 -0.9 972,408 - fusA DVU0881 0.45 -0.3 972,547 + fusA DVU0881 0.52 -0.6 972,547 - fusA DVU0881 0.52 -1.4 972,547 - fusA DVU0881 0.52 -0.8 972,588 + fusA DVU0881 0.54 +0.2 972,617 - fusA DVU0881 0.55 -3.7 972,646 - fusA DVU0881 0.57 -1.1 972,657 + fusA DVU0881 0.57 -0.4 972,701 + fusA DVU0881 0.60 -0.4 972,701 + fusA DVU0881 0.60 -0.1 972,701 + fusA DVU0881 0.60 -1.3 972,709 - fusA DVU0881 0.60 +2.5 972,709 - fusA DVU0881 0.60 -0.6 972,709 - fusA DVU0881 0.60 -1.1 972,719 - fusA DVU0881 0.60 -0.6 972,758 - fusA DVU0881 0.62 -1.1 972,803 + fusA DVU0881 0.64 +0.9 972,810 + fusA DVU0881 0.65 -1.5 972,810 + fusA DVU0881 0.65 -0.1 972,810 + fusA DVU0881 0.65 -0.9 972,811 - fusA DVU0881 0.65 -0.6 972,818 - fusA DVU0881 0.65 -0.3 972,818 - fusA DVU0881 0.65 +0.7 972,818 - fusA DVU0881 0.65 -0.5 972,818 - fusA DVU0881 0.65 -0.8 972,845 + fusA DVU0881 0.66 -1.0 972,899 + fusA DVU0881 0.69 +0.9 973,023 + fusA DVU0881 0.75 -1.1 973,058 + fusA DVU0881 0.77 -1.2 973,068 + fusA DVU0881 0.77 -0.4 973,179 + fusA DVU0881 0.83 -0.8 973,243 + fusA DVU0881 0.86 -1.1 973,346 - -0.4 973,386 - -0.1 973,386 - -1.2 973,389 + -0.8 973,398 - -1.4 973,472 + -1.1 973,472 + -0.4 973,520 + -1.3 973,560 - -2.2 973,707 - +1.5 973,722 + +0.4 973,854 + DVU0882 0.24 -0.8 973,892 - DVU0882 0.32 +0.2 973,936 - DVU0882 0.42 -1.4 973,999 + DVU0882 0.55 +0.9 974,000 + DVU0882 0.55 -0.7 974,062 - DVU0882 0.69 -0.5 974,086 + DVU0882 0.74 -0.3 974,091 + DVU0882 0.75 -1.4 974,107 + DVU0882 0.78 -0.1 974,115 - DVU0882 0.80 +0.8 974,117 + DVU0882 0.80 -0.3 974,146 - DVU0882 0.87 -0.1 974,204 - +0.4 974,235 - -1.9 974,267 + +0.1 974,321 - +0.9 974,368 + -0.1 974,375 + +0.9 974,404 - -0.0 974,407 + +0.9 974,407 + +0.1 974,513 + nrdH DVU0883 0.12 -0.3 974,519 - nrdH DVU0883 0.15 -0.6 974,521 - nrdH DVU0883 0.16 -0.5
Or see this region's nucleotide sequence