Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0812

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaK and grpE are separated by 218 nucleotidesgrpE and DORF7571 are separated by 86 nucleotidesDORF7571 and hrcA are separated by 62 nucleotides DVU0811: dnaK - dnaK protein (TIGR), at 897,365 to 899,275 dnaK DVU0812: grpE - heat shock protein GrpE (TIGR), at 899,494 to 900,069 grpE DORF7571: DORF7571 - no description, at 900,156 to 900,272 DORF7571 DVU0813: hrcA - heat-inducible transcription repressor HrcA (TIGR), at 900,335 to 901,402 hrcA Position (kb) 899 900 901Strain fitness (log2 ratio) -2 -1 0 1at 899.310 kb on - strandat 899.440 kb on - strandat 900.133 kb on - strandat 900.261 kb on - strandat 900.332 kb on + strandat 900.406 kb on - strandat 900.406 kb on - strandat 900.475 kb on - strand, within hrcAat 900.521 kb on - strand, within hrcAat 900.523 kb on + strand, within hrcAat 900.533 kb on + strand, within hrcAat 900.548 kb on + strand, within hrcAat 900.570 kb on + strand, within hrcAat 900.582 kb on + strand, within hrcAat 900.608 kb on + strand, within hrcAat 900.616 kb on + strand, within hrcAat 900.735 kb on + strand, within hrcAat 900.773 kb on + strand, within hrcAat 900.773 kb on + strand, within hrcAat 900.776 kb on - strand, within hrcAat 900.776 kb on - strand, within hrcAat 900.830 kb on + strand, within hrcAat 900.893 kb on - strand, within hrcAat 900.906 kb on + strand, within hrcAat 900.925 kb on - strand, within hrcAat 900.982 kb on + strand, within hrcAat 900.990 kb on - strand, within hrcAat 900.992 kb on + strand, within hrcAat 900.995 kb on - strand, within hrcAat 901.042 kb on - strand, within hrcAat 901.044 kb on - strand, within hrcAat 901.059 kb on + strand, within hrcA

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
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899,310 - -1.1
899,440 - +0.9
900,133 - +1.0
900,261 - +0.6
900,332 + +0.2
900,406 - -0.7
900,406 - -0.3
900,475 - hrcA DVU0813 0.13 -0.2
900,521 - hrcA DVU0813 0.17 -0.3
900,523 + hrcA DVU0813 0.18 -1.1
900,533 + hrcA DVU0813 0.19 -0.1
900,548 + hrcA DVU0813 0.20 -0.4
900,570 + hrcA DVU0813 0.22 +0.1
900,582 + hrcA DVU0813 0.23 -0.3
900,608 + hrcA DVU0813 0.26 -0.7
900,616 + hrcA DVU0813 0.26 -1.9
900,735 + hrcA DVU0813 0.37 +0.7
900,773 + hrcA DVU0813 0.41 -0.6
900,773 + hrcA DVU0813 0.41 +1.2
900,776 - hrcA DVU0813 0.41 -0.4
900,776 - hrcA DVU0813 0.41 -0.9
900,830 + hrcA DVU0813 0.46 +0.9
900,893 - hrcA DVU0813 0.52 -0.5
900,906 + hrcA DVU0813 0.53 +0.8
900,925 - hrcA DVU0813 0.55 -0.2
900,982 + hrcA DVU0813 0.61 +0.9
900,990 - hrcA DVU0813 0.61 -0.4
900,992 + hrcA DVU0813 0.62 +0.4
900,995 - hrcA DVU0813 0.62 +0.1
901,042 - hrcA DVU0813 0.66 -0.1
901,044 - hrcA DVU0813 0.66 -1.8
901,059 + hrcA DVU0813 0.68 -0.4

Or see this region's nucleotide sequence