Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purC and hisD are separated by 16 nucleotides hisD and DVU0797 are separated by 129 nucleotides
DVU0795: purC - phosphoribosylaminoimidazole-succinocarboxamide synthase (TIGR), at 880,193 to 881,089
purC
DVU0796: hisD - histidinol dehydrogenase (TIGR), at 881,106 to 882,416
hisD
DVU0797: DVU0797 - conserved hypothetical protein (TIGR), at 882,546 to 883,976
DVU0797
Position (kb) 881
882
883 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 880.169 kb on + strand at 880.204 kb on + strand at 880.212 kb on - strand at 880.383 kb on + strand, within purC at 880.620 kb on - strand, within purC at 880.779 kb on - strand, within purC at 881.172 kb on - strand at 881.244 kb on + strand, within hisD at 881.397 kb on - strand, within hisD at 881.397 kb on - strand, within hisD at 881.411 kb on + strand, within hisD at 881.411 kb on + strand, within hisD at 881.602 kb on - strand, within hisD at 881.732 kb on - strand, within hisD at 881.732 kb on - strand, within hisD at 881.955 kb on - strand, within hisD at 882.023 kb on + strand, within hisD at 882.055 kb on - strand, within hisD at 882.347 kb on - strand at 882.454 kb on + strand at 882.511 kb on - strand at 882.635 kb on + strand at 882.648 kb on - strand at 882.661 kb on + strand at 882.661 kb on + strand at 882.725 kb on - strand, within DVU0797 at 882.746 kb on + strand, within DVU0797 at 882.754 kb on - strand, within DVU0797 at 882.754 kb on - strand, within DVU0797 at 882.759 kb on - strand, within DVU0797 at 882.850 kb on - strand, within DVU0797 at 882.869 kb on + strand, within DVU0797 at 882.877 kb on - strand, within DVU0797 at 882.884 kb on - strand, within DVU0797 at 882.952 kb on - strand, within DVU0797 at 882.961 kb on + strand, within DVU0797 at 882.969 kb on - strand, within DVU0797 at 883.000 kb on - strand, within DVU0797 at 883.038 kb on + strand, within DVU0797 at 883.205 kb on + strand, within DVU0797 at 883.311 kb on - strand, within DVU0797 at 883.319 kb on + strand, within DVU0797 at 883.381 kb on - strand, within DVU0797
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 880,169 + -0.6 880,204 + +0.9 880,212 - -0.1 880,383 + purC DVU0795 0.21 +0.9 880,620 - purC DVU0795 0.48 +0.9 880,779 - purC DVU0795 0.65 +0.9 881,172 - +0.9 881,244 + hisD DVU0796 0.11 -0.1 881,397 - hisD DVU0796 0.22 -1.4 881,397 - hisD DVU0796 0.22 -0.1 881,411 + hisD DVU0796 0.23 -0.1 881,411 + hisD DVU0796 0.23 -0.1 881,602 - hisD DVU0796 0.38 -0.1 881,732 - hisD DVU0796 0.48 -1.4 881,732 - hisD DVU0796 0.48 -0.9 881,955 - hisD DVU0796 0.65 +0.9 882,023 + hisD DVU0796 0.70 -1.1 882,055 - hisD DVU0796 0.72 -0.7 882,347 - -1.9 882,454 + -0.7 882,511 - -0.2 882,635 + -1.0 882,648 - -0.1 882,661 + -0.1 882,661 + -0.9 882,725 - DVU0797 0.13 -0.4 882,746 + DVU0797 0.14 +0.6 882,754 - DVU0797 0.15 -0.5 882,754 - DVU0797 0.15 -0.4 882,759 - DVU0797 0.15 +2.9 882,850 - DVU0797 0.21 -1.2 882,869 + DVU0797 0.23 -1.0 882,877 - DVU0797 0.23 -1.0 882,884 - DVU0797 0.24 +0.9 882,952 - DVU0797 0.28 -0.9 882,961 + DVU0797 0.29 -0.8 882,969 - DVU0797 0.30 -0.2 883,000 - DVU0797 0.32 +0.3 883,038 + DVU0797 0.34 -0.4 883,205 + DVU0797 0.46 +1.9 883,311 - DVU0797 0.53 -0.2 883,319 + DVU0797 0.54 +0.4 883,381 - DVU0797 0.58 -2.7
Or see this region's nucleotide sequence