Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06536

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06536 and H281DRAFT_06537 are separated by 89 nucleotides H281DRAFT_06536: H281DRAFT_06536 - rare lipoprotein A, at 19,754 to 20,455 _06536 H281DRAFT_06537: H281DRAFT_06537 - lipoprotein NlpD, at 20,545 to 21,360 _06537 Position (kb) 19 20 21Strain fitness (log2 ratio) -1 0 1at 19.011 kb on + strandat 19.112 kb on + strandat 19.170 kb on + strandat 19.261 kb on + strandat 19.262 kb on - strandat 19.308 kb on + strandat 19.309 kb on - strandat 19.508 kb on + strandat 19.508 kb on + strandat 19.509 kb on - strandat 19.516 kb on + strandat 19.625 kb on - strandat 20.064 kb on - strand, within H281DRAFT_06536at 20.064 kb on - strand, within H281DRAFT_06536at 20.064 kb on - strand, within H281DRAFT_06536at 20.243 kb on - strand, within H281DRAFT_06536at 20.243 kb on - strand, within H281DRAFT_06536at 20.456 kb on - strandat 20.463 kb on + strandat 20.464 kb on - strandat 20.464 kb on - strandat 20.564 kb on + strandat 20.565 kb on - strandat 20.565 kb on - strandat 20.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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19,011 + +0.6
19,112 + +0.5
19,170 + +0.3
19,261 + -0.0
19,262 - +0.1
19,308 + -0.5
19,309 - +0.6
19,508 + -0.2
19,508 + +0.4
19,509 - +0.7
19,516 + -0.8
19,625 - -0.5
20,064 - H281DRAFT_06536 0.44 +1.4
20,064 - H281DRAFT_06536 0.44 -0.2
20,064 - H281DRAFT_06536 0.44 +0.7
20,243 - H281DRAFT_06536 0.70 +0.6
20,243 - H281DRAFT_06536 0.70 +0.5
20,456 - -0.1
20,463 + +0.5
20,464 - +0.7
20,464 - +1.2
20,564 + +0.2
20,565 - -0.0
20,565 - -0.1
20,565 - +0.2

Or see this region's nucleotide sequence