Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05534

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05533 and H281DRAFT_05534 are separated by 38 nucleotidesH281DRAFT_05534 and H281DRAFT_05535 overlap by 7 nucleotidesH281DRAFT_05535 and H281DRAFT_05536 are separated by 8 nucleotides H281DRAFT_05533: H281DRAFT_05533 - putative spermidine/putrescine transport system substrate-binding protein, at 117,723 to 118,808 _05533 H281DRAFT_05534: H281DRAFT_05534 - Zn-dependent dipeptidase, dipeptidase homolog, at 118,847 to 119,812 _05534 H281DRAFT_05535: H281DRAFT_05535 - YD repeat-containing protein, at 119,806 to 120,549 _05535 H281DRAFT_05536: H281DRAFT_05536 - hypothetical protein, at 120,558 to 122,282 _05536 Position (kb) 118 119 120Strain fitness (log2 ratio) -1 0 1at 117.859 kb on + strand, within H281DRAFT_05533at 117.860 kb on - strand, within H281DRAFT_05533at 117.860 kb on - strand, within H281DRAFT_05533at 117.930 kb on - strand, within H281DRAFT_05533at 117.978 kb on - strand, within H281DRAFT_05533at 118.443 kb on - strand, within H281DRAFT_05533at 118.465 kb on - strand, within H281DRAFT_05533at 118.669 kb on + strand, within H281DRAFT_05533at 118.670 kb on - strand, within H281DRAFT_05533at 118.676 kb on + strand, within H281DRAFT_05533at 118.822 kb on - strandat 119.348 kb on - strand, within H281DRAFT_05534at 119.485 kb on - strand, within H281DRAFT_05534at 119.641 kb on + strand, within H281DRAFT_05534at 119.873 kb on + strandat 119.970 kb on - strand, within H281DRAFT_05535at 120.147 kb on - strand, within H281DRAFT_05535at 120.301 kb on - strand, within H281DRAFT_05535at 120.301 kb on - strand, within H281DRAFT_05535at 120.505 kb on + strandat 120.721 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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117,859 + H281DRAFT_05533 0.13 +0.4
117,860 - H281DRAFT_05533 0.13 +0.0
117,860 - H281DRAFT_05533 0.13 -0.0
117,930 - H281DRAFT_05533 0.19 +0.8
117,978 - H281DRAFT_05533 0.23 +0.2
118,443 - H281DRAFT_05533 0.66 -1.0
118,465 - H281DRAFT_05533 0.68 -0.1
118,669 + H281DRAFT_05533 0.87 -0.7
118,670 - H281DRAFT_05533 0.87 +0.5
118,676 + H281DRAFT_05533 0.88 +0.8
118,822 - -0.3
119,348 - H281DRAFT_05534 0.52 +1.3
119,485 - H281DRAFT_05534 0.66 +0.6
119,641 + H281DRAFT_05534 0.82 +0.0
119,873 + +0.6
119,970 - H281DRAFT_05535 0.22 -0.2
120,147 - H281DRAFT_05535 0.46 -0.7
120,301 - H281DRAFT_05535 0.67 -1.2
120,301 - H281DRAFT_05535 0.67 +1.1
120,505 + -0.2
120,721 - +0.9

Or see this region's nucleotide sequence