Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05269

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05268 and H281DRAFT_05269 are separated by 310 nucleotidesH281DRAFT_05269 and H281DRAFT_05270 are separated by 243 nucleotides H281DRAFT_05268: H281DRAFT_05268 - Alkylated DNA repair dioxygenase AlkB, at 9,699 to 10,313 _05268 H281DRAFT_05269: H281DRAFT_05269 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 10,624 to 11,610 _05269 H281DRAFT_05270: H281DRAFT_05270 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 11,854 to 13,473 _05270 Position (kb) 10 11 12Strain fitness (log2 ratio) -1 0 1 2at 9.648 kb on + strandat 9.649 kb on - strandat 9.651 kb on + strandat 9.652 kb on - strandat 9.699 kb on - strandat 9.699 kb on - strandat 9.710 kb on - strandat 9.821 kb on + strand, within H281DRAFT_05268at 9.821 kb on + strand, within H281DRAFT_05268at 9.831 kb on - strand, within H281DRAFT_05268at 9.894 kb on + strand, within H281DRAFT_05268at 9.894 kb on + strand, within H281DRAFT_05268at 9.894 kb on + strand, within H281DRAFT_05268at 9.894 kb on + strand, within H281DRAFT_05268at 9.901 kb on - strand, within H281DRAFT_05268at 9.952 kb on + strand, within H281DRAFT_05268at 9.953 kb on - strand, within H281DRAFT_05268at 10.032 kb on - strandat 10.127 kb on + strand, within H281DRAFT_05268at 10.128 kb on - strand, within H281DRAFT_05268at 10.128 kb on - strand, within H281DRAFT_05268at 10.215 kb on - strand, within H281DRAFT_05268at 10.259 kb on + strandat 10.260 kb on - strandat 10.371 kb on + strandat 10.371 kb on + strandat 10.372 kb on - strandat 10.460 kb on + strandat 10.461 kb on - strandat 10.473 kb on + strandat 10.474 kb on - strandat 10.505 kb on + strandat 10.505 kb on + strandat 10.540 kb on - strandat 10.632 kb on + strandat 10.632 kb on + strandat 10.633 kb on - strandat 10.690 kb on - strandat 10.888 kb on + strand, within H281DRAFT_05269at 11.098 kb on + strand, within H281DRAFT_05269at 11.101 kb on - strand, within H281DRAFT_05269at 11.309 kb on + strand, within H281DRAFT_05269at 11.618 kb on - strandat 11.618 kb on - strandat 11.635 kb on - strandat 11.644 kb on + strandat 11.645 kb on - strandat 11.853 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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9,648 + +0.5
9,649 - -0.0
9,651 + -0.1
9,652 - -0.1
9,699 - -0.0
9,699 - -1.1
9,710 - -0.1
9,821 + H281DRAFT_05268 0.20 -0.4
9,821 + H281DRAFT_05268 0.20 -1.3
9,831 - H281DRAFT_05268 0.21 +0.1
9,894 + H281DRAFT_05268 0.32 +0.2
9,894 + H281DRAFT_05268 0.32 +0.2
9,894 + H281DRAFT_05268 0.32 +1.3
9,894 + H281DRAFT_05268 0.32 -0.0
9,901 - H281DRAFT_05268 0.33 +0.1
9,952 + H281DRAFT_05268 0.41 +0.1
9,953 - H281DRAFT_05268 0.41 +0.4
10,032 - -0.1
10,127 + H281DRAFT_05268 0.70 -1.4
10,128 - H281DRAFT_05268 0.70 +0.4
10,128 - H281DRAFT_05268 0.70 -0.1
10,215 - H281DRAFT_05268 0.84 +0.2
10,259 + -1.1
10,260 - +0.2
10,371 + +1.5
10,371 + +0.4
10,372 - +0.1
10,460 + +1.2
10,461 - +0.2
10,473 + -0.5
10,474 - -0.1
10,505 + +1.1
10,505 + -0.1
10,540 - -0.4
10,632 + +0.3
10,632 + -1.7
10,633 - +0.3
10,690 - -0.2
10,888 + H281DRAFT_05269 0.27 +0.3
11,098 + H281DRAFT_05269 0.48 +0.8
11,101 - H281DRAFT_05269 0.48 +0.2
11,309 + H281DRAFT_05269 0.69 +1.9
11,618 - -1.6
11,618 - -0.2
11,635 - -1.5
11,644 + +0.1
11,645 - +0.4
11,853 + +0.7

Or see this region's nucleotide sequence