Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04608

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04606 and H281DRAFT_04607 are separated by 106 nucleotidesH281DRAFT_04607 and H281DRAFT_04608 are separated by 37 nucleotidesH281DRAFT_04608 and H281DRAFT_04609 are separated by 38 nucleotidesH281DRAFT_04609 and H281DRAFT_04610 are separated by 494 nucleotides H281DRAFT_04606: H281DRAFT_04606 - threonine ammonia-lyase, biosynthetic, long form, at 3 to 782 _04606 H281DRAFT_04607: H281DRAFT_04607 - hypothetical protein, at 889 to 1,260 _04607 H281DRAFT_04608: H281DRAFT_04608 - hypothetical protein, at 1,298 to 1,474 _04608 H281DRAFT_04609: H281DRAFT_04609 - hypothetical protein, at 1,513 to 1,731 _04609 H281DRAFT_04610: H281DRAFT_04610 - Fe-S oxidoreductase, at 2,226 to 6,320 _04610 Position (kb) 1 2Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 0.736 kb on + strandat 0.766 kb on + strandat 0.766 kb on + strandat 0.898 kb on - strandat 1.025 kb on + strand, within H281DRAFT_04607at 1.026 kb on - strand, within H281DRAFT_04607at 1.164 kb on + strand, within H281DRAFT_04607at 1.699 kb on - strand, within H281DRAFT_04609at 1.844 kb on + strandat 2.078 kb on + strandat 2.078 kb on + strandat 2.079 kb on - strandat 2.311 kb on - strandat 2.316 kb on + strandat 2.316 kb on + strandat 2.317 kb on - strandat 2.317 kb on - strandat 2.356 kb on + strandat 2.431 kb on - strandat 2.431 kb on - strandat 2.473 kb on - strandat 2.473 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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736 + -0.3
766 + +0.2
766 + -0.7
898 - -0.1
1,025 + H281DRAFT_04607 0.37 +0.5
1,026 - H281DRAFT_04607 0.37 +1.7
1,164 + H281DRAFT_04607 0.74 +0.1
1,699 - H281DRAFT_04609 0.85 -0.4
1,844 + -0.1
2,078 + +0.5
2,078 + -0.0
2,079 - -3.3
2,311 - -4.5
2,316 + -3.1
2,316 + -5.3
2,317 - -1.9
2,317 - -4.4
2,356 + -2.8
2,431 - -3.9
2,431 - -0.5
2,473 - -1.9
2,473 - -1.8

Or see this region's nucleotide sequence