Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04393

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04392 and H281DRAFT_04393 are separated by 151 nucleotidesH281DRAFT_04393 and H281DRAFT_04394 are separated by 73 nucleotides H281DRAFT_04392: H281DRAFT_04392 - hypothetical protein, at 107,469 to 108,323 _04392 H281DRAFT_04393: H281DRAFT_04393 - putative membrane protein, at 108,475 to 108,939 _04393 H281DRAFT_04394: H281DRAFT_04394 - ATP-binding cassette, subfamily B, at 109,013 to 110,890 _04394 Position (kb) 108 109Strain fitness (log2 ratio) -1 0 1at 107.531 kb on - strandat 107.531 kb on - strandat 108.374 kb on + strandat 108.375 kb on - strandat 108.375 kb on - strandat 108.375 kb on - strandat 108.375 kb on - strandat 108.518 kb on - strandat 108.609 kb on + strand, within H281DRAFT_04393at 108.609 kb on + strand, within H281DRAFT_04393at 108.610 kb on - strand, within H281DRAFT_04393at 108.673 kb on + strand, within H281DRAFT_04393at 108.674 kb on - strand, within H281DRAFT_04393at 108.692 kb on - strand, within H281DRAFT_04393at 108.694 kb on + strand, within H281DRAFT_04393at 108.695 kb on - strand, within H281DRAFT_04393at 108.695 kb on - strand, within H281DRAFT_04393at 108.740 kb on + strand, within H281DRAFT_04393at 108.938 kb on - strandat 108.938 kb on - strandat 108.962 kb on + strandat 108.962 kb on + strandat 108.962 kb on + strandat 108.971 kb on + strandat 108.971 kb on + strandat 108.981 kb on + strandat 108.982 kb on - strandat 108.982 kb on - strandat 109.140 kb on + strandat 109.190 kb on + strandat 109.450 kb on - strand, within H281DRAFT_04394at 109.540 kb on - strand, within H281DRAFT_04394at 109.540 kb on - strandat 109.702 kb on - strand, within H281DRAFT_04394at 109.804 kb on - strand, within H281DRAFT_04394at 109.804 kb on - strand, within H281DRAFT_04394

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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107,531 - +0.1
107,531 - +0.1
108,374 + -0.4
108,375 - -0.2
108,375 - -0.4
108,375 - +0.1
108,375 - -0.5
108,518 - +0.0
108,609 + H281DRAFT_04393 0.29 -0.6
108,609 + H281DRAFT_04393 0.29 -0.1
108,610 - H281DRAFT_04393 0.29 -0.1
108,673 + H281DRAFT_04393 0.43 +0.3
108,674 - H281DRAFT_04393 0.43 -0.2
108,692 - H281DRAFT_04393 0.47 +0.9
108,694 + H281DRAFT_04393 0.47 -0.6
108,695 - H281DRAFT_04393 0.47 -1.0
108,695 - H281DRAFT_04393 0.47 -0.1
108,740 + H281DRAFT_04393 0.57 -1.5
108,938 - -0.9
108,938 - -0.3
108,962 + +0.2
108,962 + +0.1
108,962 + -0.4
108,971 + -0.2
108,971 + -0.6
108,981 + -0.3
108,982 - -0.3
108,982 - +0.2
109,140 + -0.3
109,190 + -0.8
109,450 - H281DRAFT_04394 0.23 -0.3
109,540 - H281DRAFT_04394 0.28 +0.4
109,540 - -1.3
109,702 - H281DRAFT_04394 0.37 -0.7
109,804 - H281DRAFT_04394 0.42 -0.2
109,804 - H281DRAFT_04394 0.42 -0.3

Or see this region's nucleotide sequence