Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04236

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04235 and H281DRAFT_04236 are separated by 16 nucleotidesH281DRAFT_04236 and H281DRAFT_04237 are separated by 92 nucleotides H281DRAFT_04235: H281DRAFT_04235 - MFS transporter, DHA1 family, arabinose polymer transporter, at 354,400 to 355,590 _04235 H281DRAFT_04236: H281DRAFT_04236 - Predicted ring-cleavage extradiol dioxygenase, at 355,607 to 356,032 _04236 H281DRAFT_04237: H281DRAFT_04237 - transcriptional regulator, LysR family, at 356,125 to 357,120 _04237 Position (kb) 355 356 357Strain fitness (log2 ratio) -2 -1 0 1at 354.874 kb on + strand, within H281DRAFT_04235at 354.928 kb on - strand, within H281DRAFT_04235at 354.929 kb on + strand, within H281DRAFT_04235at 354.929 kb on + strand, within H281DRAFT_04235at 354.930 kb on - strand, within H281DRAFT_04235at 354.930 kb on - strandat 354.930 kb on - strand, within H281DRAFT_04235at 355.225 kb on + strand, within H281DRAFT_04235at 355.226 kb on - strand, within H281DRAFT_04235at 355.319 kb on + strand, within H281DRAFT_04235at 355.344 kb on + strand, within H281DRAFT_04235at 355.344 kb on + strand, within H281DRAFT_04235at 355.345 kb on - strand, within H281DRAFT_04235at 355.345 kb on - strand, within H281DRAFT_04235at 355.452 kb on - strandat 355.452 kb on - strand, within H281DRAFT_04235at 355.608 kb on + strandat 355.609 kb on - strandat 355.881 kb on + strand, within H281DRAFT_04236at 355.882 kb on - strand, within H281DRAFT_04236at 355.938 kb on - strand, within H281DRAFT_04236at 356.352 kb on - strand, within H281DRAFT_04237at 356.476 kb on + strand, within H281DRAFT_04237at 356.635 kb on + strand, within H281DRAFT_04237at 356.636 kb on - strand, within H281DRAFT_04237at 356.636 kb on - strand, within H281DRAFT_04237at 356.636 kb on - strand, within H281DRAFT_04237at 356.668 kb on + strand, within H281DRAFT_04237at 356.669 kb on - strand, within H281DRAFT_04237at 356.700 kb on + strand, within H281DRAFT_04237at 356.700 kb on + strand, within H281DRAFT_04237at 356.761 kb on + strand, within H281DRAFT_04237at 356.761 kb on + strand, within H281DRAFT_04237at 356.761 kb on + strand, within H281DRAFT_04237at 356.761 kb on + strand, within H281DRAFT_04237at 356.762 kb on - strand, within H281DRAFT_04237at 356.944 kb on + strand, within H281DRAFT_04237

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
354,874 + H281DRAFT_04235 0.40 +0.1
354,928 - H281DRAFT_04235 0.44 +0.2
354,929 + H281DRAFT_04235 0.44 +0.4
354,929 + H281DRAFT_04235 0.44 +0.6
354,930 - H281DRAFT_04235 0.45 -0.5
354,930 - -0.7
354,930 - H281DRAFT_04235 0.45 +0.2
355,225 + H281DRAFT_04235 0.69 +0.3
355,226 - H281DRAFT_04235 0.69 +0.1
355,319 + H281DRAFT_04235 0.77 -0.5
355,344 + H281DRAFT_04235 0.79 -0.2
355,344 + H281DRAFT_04235 0.79 +0.4
355,345 - H281DRAFT_04235 0.79 +1.0
355,345 - H281DRAFT_04235 0.79 +0.1
355,452 - -0.2
355,452 - H281DRAFT_04235 0.88 +0.4
355,608 + -2.1
355,609 - +0.2
355,881 + H281DRAFT_04236 0.64 -1.3
355,882 - H281DRAFT_04236 0.65 -0.6
355,938 - H281DRAFT_04236 0.78 -0.4
356,352 - H281DRAFT_04237 0.23 +0.4
356,476 + H281DRAFT_04237 0.35 +0.4
356,635 + H281DRAFT_04237 0.51 +0.2
356,636 - H281DRAFT_04237 0.51 +0.5
356,636 - H281DRAFT_04237 0.51 +1.5
356,636 - H281DRAFT_04237 0.51 +0.4
356,668 + H281DRAFT_04237 0.55 +0.8
356,669 - H281DRAFT_04237 0.55 +0.3
356,700 + H281DRAFT_04237 0.58 -1.4
356,700 + H281DRAFT_04237 0.58 +0.1
356,761 + H281DRAFT_04237 0.64 +0.4
356,761 + H281DRAFT_04237 0.64 +0.6
356,761 + H281DRAFT_04237 0.64 +0.2
356,761 + H281DRAFT_04237 0.64 +0.0
356,762 - H281DRAFT_04237 0.64 -1.8
356,944 + H281DRAFT_04237 0.82 -2.0

Or see this region's nucleotide sequence