Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03996

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03994 and H281DRAFT_03995 are separated by 410 nucleotidesH281DRAFT_03995 and H281DRAFT_03996 are separated by 278 nucleotidesH281DRAFT_03996 and H281DRAFT_03997 are separated by 106 nucleotides H281DRAFT_03994: H281DRAFT_03994 - hypothetical protein, at 99,639 to 99,791 _03994 H281DRAFT_03995: H281DRAFT_03995 - hypothetical protein, at 100,202 to 100,351 _03995 H281DRAFT_03996: H281DRAFT_03996 - chorismate mutase (EC 5.4.99.5), at 100,630 to 101,226 _03996 H281DRAFT_03997: H281DRAFT_03997 - DNA polymerase-3 subunit epsilon, at 101,333 to 102,484 _03997 Position (kb) 100 101 102Strain fitness (log2 ratio) -1 0 1 2at 99.747 kb on - strand, within H281DRAFT_03994at 99.796 kb on + strandat 99.796 kb on + strandat 99.797 kb on - strandat 99.805 kb on + strandat 99.812 kb on + strandat 99.812 kb on + strandat 99.835 kb on + strandat 99.938 kb on + strandat 99.950 kb on - strandat 99.951 kb on + strandat 100.071 kb on + strandat 100.187 kb on + strandat 100.188 kb on - strandat 100.246 kb on + strand, within H281DRAFT_03995at 100.246 kb on + strand, within H281DRAFT_03995at 100.246 kb on + strand, within H281DRAFT_03995at 100.247 kb on - strand, within H281DRAFT_03995at 100.349 kb on + strandat 100.349 kb on + strandat 100.390 kb on - strandat 100.390 kb on - strandat 100.583 kb on + strandat 100.583 kb on + strandat 100.584 kb on - strandat 100.803 kb on + strand, within H281DRAFT_03996at 101.136 kb on + strand, within H281DRAFT_03996at 101.137 kb on - strand, within H281DRAFT_03996at 101.192 kb on + strandat 101.192 kb on + strandat 101.192 kb on + strandat 101.192 kb on + strandat 101.192 kb on + strandat 101.193 kb on - strandat 101.193 kb on - strandat 101.193 kb on - strandat 101.193 kb on - strandat 101.305 kb on + strandat 101.306 kb on - strandat 101.345 kb on + strandat 101.421 kb on + strandat 101.421 kb on + strandat 101.502 kb on + strand, within H281DRAFT_03997at 101.502 kb on + strand, within H281DRAFT_03997at 101.502 kb on + strand, within H281DRAFT_03997at 101.502 kb on + strand, within H281DRAFT_03997at 101.503 kb on - strand, within H281DRAFT_03997at 101.503 kb on - strand, within H281DRAFT_03997at 101.503 kb on - strand, within H281DRAFT_03997at 101.503 kb on - strand, within H281DRAFT_03997at 101.503 kb on - strand, within H281DRAFT_03997at 101.711 kb on + strand, within H281DRAFT_03997at 101.711 kb on + strand, within H281DRAFT_03997at 101.737 kb on + strand, within H281DRAFT_03997at 101.738 kb on + strand, within H281DRAFT_03997at 101.738 kb on + strand, within H281DRAFT_03997at 101.739 kb on - strand, within H281DRAFT_03997at 101.739 kb on - strand, within H281DRAFT_03997at 101.741 kb on - strand, within H281DRAFT_03997at 101.741 kb on - strand, within H281DRAFT_03997at 101.741 kb on - strand, within H281DRAFT_03997at 101.814 kb on + strand, within H281DRAFT_03997at 101.815 kb on - strand, within H281DRAFT_03997at 101.815 kb on - strand, within H281DRAFT_03997at 101.815 kb on - strand, within H281DRAFT_03997at 101.815 kb on - strand, within H281DRAFT_03997at 101.815 kb on - strand, within H281DRAFT_03997at 101.838 kb on + strand, within H281DRAFT_03997at 101.838 kb on + strand, within H281DRAFT_03997at 101.839 kb on - strand, within H281DRAFT_03997at 101.839 kb on - strand, within H281DRAFT_03997at 101.839 kb on - strand, within H281DRAFT_03997at 101.847 kb on + strand, within H281DRAFT_03997at 101.847 kb on + strand, within H281DRAFT_03997at 101.933 kb on - strand, within H281DRAFT_03997at 101.933 kb on - strand, within H281DRAFT_03997at 101.951 kb on + strand, within H281DRAFT_03997at 101.952 kb on - strand, within H281DRAFT_03997at 101.952 kb on - strand, within H281DRAFT_03997at 102.190 kb on + strand, within H281DRAFT_03997

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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99,747 - H281DRAFT_03994 0.71 +0.1
99,796 + +0.1
99,796 + +0.1
99,797 - +0.4
99,805 + +0.1
99,812 + +0.1
99,812 + +0.4
99,835 + +0.7
99,938 + +0.5
99,950 - +1.0
99,951 + +0.1
100,071 + +0.1
100,187 + -0.4
100,188 - +0.4
100,246 + H281DRAFT_03995 0.29 +0.6
100,246 + H281DRAFT_03995 0.29 +0.1
100,246 + H281DRAFT_03995 0.29 +0.1
100,247 - H281DRAFT_03995 0.30 +1.9
100,349 + +0.5
100,349 + +1.2
100,390 - +0.5
100,390 - +0.3
100,583 + +0.7
100,583 + +0.8
100,584 - +0.8
100,803 + H281DRAFT_03996 0.29 +1.0
101,136 + H281DRAFT_03996 0.85 +0.5
101,137 - H281DRAFT_03996 0.85 -0.0
101,192 + -0.1
101,192 + -0.4
101,192 + +0.5
101,192 + -0.5
101,192 + -0.0
101,193 - -0.5
101,193 - -0.0
101,193 - +0.4
101,193 - -0.4
101,305 + -0.4
101,306 - +0.9
101,345 + -0.1
101,421 + +0.2
101,421 + -0.1
101,502 + H281DRAFT_03997 0.15 +0.1
101,502 + H281DRAFT_03997 0.15 -0.3
101,502 + H281DRAFT_03997 0.15 -0.0
101,502 + H281DRAFT_03997 0.15 -0.9
101,503 - H281DRAFT_03997 0.15 +0.0
101,503 - H281DRAFT_03997 0.15 -0.4
101,503 - H281DRAFT_03997 0.15 +0.1
101,503 - H281DRAFT_03997 0.15 +0.5
101,503 - H281DRAFT_03997 0.15 +0.1
101,711 + H281DRAFT_03997 0.33 +0.3
101,711 + H281DRAFT_03997 0.33 +1.0
101,737 + H281DRAFT_03997 0.35 +1.1
101,738 + H281DRAFT_03997 0.35 +0.3
101,738 + H281DRAFT_03997 0.35 +0.2
101,739 - H281DRAFT_03997 0.35 +0.3
101,739 - H281DRAFT_03997 0.35 -0.4
101,741 - H281DRAFT_03997 0.35 +0.3
101,741 - H281DRAFT_03997 0.35 -0.0
101,741 - H281DRAFT_03997 0.35 +0.4
101,814 + H281DRAFT_03997 0.42 +0.1
101,815 - H281DRAFT_03997 0.42 -0.6
101,815 - H281DRAFT_03997 0.42 +1.1
101,815 - H281DRAFT_03997 0.42 +0.1
101,815 - H281DRAFT_03997 0.42 -0.2
101,815 - H281DRAFT_03997 0.42 -0.0
101,838 + H281DRAFT_03997 0.44 +0.5
101,838 + H281DRAFT_03997 0.44 +0.5
101,839 - H281DRAFT_03997 0.44 +0.3
101,839 - H281DRAFT_03997 0.44 +0.3
101,839 - H281DRAFT_03997 0.44 -0.6
101,847 + H281DRAFT_03997 0.45 +0.9
101,847 + H281DRAFT_03997 0.45 +0.1
101,933 - H281DRAFT_03997 0.52 -0.1
101,933 - H281DRAFT_03997 0.52 -0.9
101,951 + H281DRAFT_03997 0.54 -0.6
101,952 - H281DRAFT_03997 0.54 +0.1
101,952 - H281DRAFT_03997 0.54 +0.1
102,190 + H281DRAFT_03997 0.74 -0.1

Or see this region's nucleotide sequence