Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03341

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03340 and H281DRAFT_03341 are separated by 29 nucleotidesH281DRAFT_03341 and H281DRAFT_03342 are separated by 57 nucleotides H281DRAFT_03340: H281DRAFT_03340 - hypothetical protein, at 397,950 to 398,966 _03340 H281DRAFT_03341: H281DRAFT_03341 - Predicted arabinose efflux permease, MFS family, at 398,996 to 400,357 _03341 H281DRAFT_03342: H281DRAFT_03342 - Glyoxylase, beta-lactamase superfamily II, at 400,415 to 401,290 _03342 Position (kb) 398 399 400 401Strain fitness (log2 ratio) -1 0 1at 398.471 kb on + strand, within H281DRAFT_03340at 398.471 kb on + strand, within H281DRAFT_03340at 398.723 kb on - strand, within H281DRAFT_03340at 398.740 kb on - strand, within H281DRAFT_03340at 398.746 kb on - strand, within H281DRAFT_03340at 399.077 kb on + strandat 399.148 kb on - strand, within H281DRAFT_03341at 399.518 kb on - strand, within H281DRAFT_03341at 399.518 kb on - strand, within H281DRAFT_03341at 399.726 kb on + strand, within H281DRAFT_03341at 399.890 kb on + strand, within H281DRAFT_03341at 399.891 kb on - strand, within H281DRAFT_03341at 400.064 kb on + strand, within H281DRAFT_03341at 400.314 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
398,471 + H281DRAFT_03340 0.51 -0.7
398,471 + H281DRAFT_03340 0.51 +0.7
398,723 - H281DRAFT_03340 0.76 +0.2
398,740 - H281DRAFT_03340 0.78 -0.6
398,746 - H281DRAFT_03340 0.78 -0.7
399,077 + -1.4
399,148 - H281DRAFT_03341 0.11 +0.5
399,518 - H281DRAFT_03341 0.38 +0.2
399,518 - H281DRAFT_03341 0.38 +0.8
399,726 + H281DRAFT_03341 0.54 +1.0
399,890 + H281DRAFT_03341 0.66 +0.6
399,891 - H281DRAFT_03341 0.66 -0.1
400,064 + H281DRAFT_03341 0.78 +1.0
400,314 - -0.0

Or see this region's nucleotide sequence