Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03108

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03106 and H281DRAFT_03107 overlap by 4 nucleotidesH281DRAFT_03107 and H281DRAFT_03108 are separated by 127 nucleotidesH281DRAFT_03108 and H281DRAFT_03109 overlap by 4 nucleotidesH281DRAFT_03109 and H281DRAFT_03110 are separated by 75 nucleotides H281DRAFT_03106: H281DRAFT_03106 - PAS domain S-box-containing protein, at 141,893 to 143,524 _03106 H281DRAFT_03107: H281DRAFT_03107 - two component transcriptional regulator, LuxR family, at 143,521 to 144,153 _03107 H281DRAFT_03108: H281DRAFT_03108 - hypothetical protein, at 144,281 to 144,559 _03108 H281DRAFT_03109: H281DRAFT_03109 - hypothetical protein, at 144,556 to 144,765 _03109 H281DRAFT_03110: H281DRAFT_03110 - concentrative nucleoside transporter, CNT family, at 144,841 to 146,118 _03110 Position (kb) 144 145Strain fitness (log2 ratio) -1 0 1at 143.321 kb on - strand, within H281DRAFT_03106at 143.321 kb on - strand, within H281DRAFT_03106at 143.321 kb on - strand, within H281DRAFT_03106at 143.490 kb on + strandat 143.494 kb on + strandat 143.494 kb on + strandat 143.494 kb on + strandat 143.494 kb on + strandat 144.155 kb on + strandat 144.184 kb on - strandat 144.184 kb on - strandat 144.399 kb on + strand, within H281DRAFT_03108at 144.606 kb on + strand, within H281DRAFT_03109at 144.763 kb on + strandat 144.878 kb on + strandat 144.979 kb on - strand, within H281DRAFT_03110at 145.193 kb on - strand, within H281DRAFT_03110

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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143,321 - H281DRAFT_03106 0.88 +0.4
143,321 - H281DRAFT_03106 0.88 -1.0
143,321 - H281DRAFT_03106 0.88 -0.7
143,490 + +1.7
143,494 + -0.9
143,494 + +0.4
143,494 + +0.3
143,494 + +0.0
144,155 + +0.5
144,184 - -0.1
144,184 - +0.3
144,399 + H281DRAFT_03108 0.42 +0.7
144,606 + H281DRAFT_03109 0.24 +0.7
144,763 + +0.3
144,878 + -0.2
144,979 - H281DRAFT_03110 0.11 +0.3
145,193 - H281DRAFT_03110 0.28 -0.6

Or see this region's nucleotide sequence