Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02981

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02980 and H281DRAFT_02981 are separated by 190 nucleotidesH281DRAFT_02981 and H281DRAFT_02982 are separated by 25 nucleotides H281DRAFT_02980: H281DRAFT_02980 - Citrate synthase, at 1 to 597 _02980 H281DRAFT_02981: H281DRAFT_02981 - aconitase /2-methylcitrate dehydratase (trans-methylaconitate-forming), at 788 to 3,385 _02981 H281DRAFT_02982: H281DRAFT_02982 - 2-methylaconitate cis-trans isomerase, at 3,411 to 4,592 _02982 Position (kb) 0 1 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.548 kb on - strandat 0.679 kb on + strandat 0.680 kb on - strandat 0.684 kb on + strandat 0.685 kb on - strandat 0.769 kb on + strandat 0.794 kb on - strandat 1.020 kb on + strandat 1.020 kb on + strandat 1.478 kb on + strand, within H281DRAFT_02981at 1.481 kb on - strand, within H281DRAFT_02981at 1.520 kb on - strand, within H281DRAFT_02981at 1.537 kb on + strand, within H281DRAFT_02981at 1.601 kb on + strand, within H281DRAFT_02981at 1.601 kb on + strand, within H281DRAFT_02981at 1.703 kb on + strand, within H281DRAFT_02981at 1.704 kb on - strand, within H281DRAFT_02981at 1.827 kb on - strand, within H281DRAFT_02981at 2.195 kb on + strand, within H281DRAFT_02981at 2.273 kb on + strand, within H281DRAFT_02981at 2.273 kb on + strand, within H281DRAFT_02981at 2.273 kb on + strand, within H281DRAFT_02981at 2.273 kb on + strand, within H281DRAFT_02981at 2.440 kb on + strand, within H281DRAFT_02981at 2.586 kb on - strand, within H281DRAFT_02981at 2.609 kb on + strand, within H281DRAFT_02981at 2.701 kb on + strand, within H281DRAFT_02981at 2.702 kb on - strand, within H281DRAFT_02981at 2.702 kb on - strand, within H281DRAFT_02981at 2.702 kb on - strand, within H281DRAFT_02981at 2.760 kb on - strand, within H281DRAFT_02981at 2.968 kb on + strand, within H281DRAFT_02981at 2.969 kb on - strand, within H281DRAFT_02981at 2.969 kb on - strand, within H281DRAFT_02981at 3.011 kb on + strand, within H281DRAFT_02981at 3.447 kb on + strandat 3.448 kb on - strandat 3.636 kb on - strand, within H281DRAFT_02982at 3.666 kb on + strand, within H281DRAFT_02982at 3.666 kb on + strand, within H281DRAFT_02982at 3.666 kb on + strand, within H281DRAFT_02982at 3.666 kb on + strand, within H281DRAFT_02982at 4.134 kb on - strand, within H281DRAFT_02982at 4.134 kb on - strand, within H281DRAFT_02982

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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548 - +0.8
679 + +0.0
680 - +0.2
684 + -0.6
685 - -0.3
769 + +0.3
794 - -1.4
1,020 + +0.4
1,020 + -0.5
1,478 + H281DRAFT_02981 0.27 -0.5
1,481 - H281DRAFT_02981 0.27 -0.4
1,520 - H281DRAFT_02981 0.28 -0.3
1,537 + H281DRAFT_02981 0.29 +0.1
1,601 + H281DRAFT_02981 0.31 -0.3
1,601 + H281DRAFT_02981 0.31 -0.8
1,703 + H281DRAFT_02981 0.35 -1.3
1,704 - H281DRAFT_02981 0.35 -0.9
1,827 - H281DRAFT_02981 0.40 -0.8
2,195 + H281DRAFT_02981 0.54 -1.6
2,273 + H281DRAFT_02981 0.57 -0.7
2,273 + H281DRAFT_02981 0.57 -0.5
2,273 + H281DRAFT_02981 0.57 -1.6
2,273 + H281DRAFT_02981 0.57 +0.1
2,440 + H281DRAFT_02981 0.64 -0.8
2,586 - H281DRAFT_02981 0.69 -2.8
2,609 + H281DRAFT_02981 0.70 -0.4
2,701 + H281DRAFT_02981 0.74 -0.7
2,702 - H281DRAFT_02981 0.74 -0.2
2,702 - H281DRAFT_02981 0.74 -0.6
2,702 - H281DRAFT_02981 0.74 -0.0
2,760 - H281DRAFT_02981 0.76 -0.9
2,968 + H281DRAFT_02981 0.84 +0.4
2,969 - H281DRAFT_02981 0.84 -0.6
2,969 - H281DRAFT_02981 0.84 -0.7
3,011 + H281DRAFT_02981 0.86 +0.2
3,447 + -0.8
3,448 - +0.1
3,636 - H281DRAFT_02982 0.19 +1.0
3,666 + H281DRAFT_02982 0.22 -0.4
3,666 + H281DRAFT_02982 0.22 +0.2
3,666 + H281DRAFT_02982 0.22 +0.2
3,666 + H281DRAFT_02982 0.22 -1.5
4,134 - H281DRAFT_02982 0.61 -1.6
4,134 - H281DRAFT_02982 0.61 -1.8

Or see this region's nucleotide sequence