Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02701

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02700 and H281DRAFT_02701 are separated by 613 nucleotidesH281DRAFT_02701 and H281DRAFT_02702 are separated by 11 nucleotides H281DRAFT_02700: H281DRAFT_02700 - feruloyl esterase, at 281,948 to 283,648 _02700 H281DRAFT_02701: H281DRAFT_02701 - dihydroxyacetone kinase, C-terminal domain, at 284,262 to 284,888 _02701 H281DRAFT_02702: H281DRAFT_02702 - dihydroxyacetone kinase DhaK subunit, at 284,900 to 285,910 _02702 Position (kb) 284 285Strain fitness (log2 ratio) -1 0 1at 283.407 kb on + strand, within H281DRAFT_02700at 283.627 kb on + strandat 283.887 kb on - strandat 284.086 kb on + strandat 284.191 kb on + strandat 284.191 kb on + strandat 284.293 kb on - strandat 284.390 kb on + strand, within H281DRAFT_02701at 284.880 kb on + strandat 284.987 kb on - strandat 284.987 kb on - strandat 285.067 kb on + strand, within H281DRAFT_02702at 285.257 kb on - strand, within H281DRAFT_02702at 285.603 kb on + strand, within H281DRAFT_02702at 285.604 kb on - strand, within H281DRAFT_02702

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
283,407 + H281DRAFT_02700 0.86 -0.1
283,627 + +0.7
283,887 - +0.1
284,086 + -1.6
284,191 + +0.7
284,191 + -0.1
284,293 - -0.5
284,390 + H281DRAFT_02701 0.20 -0.7
284,880 + -0.2
284,987 - -0.3
284,987 - -0.0
285,067 + H281DRAFT_02702 0.17 +0.8
285,257 - H281DRAFT_02702 0.35 +0.0
285,603 + H281DRAFT_02702 0.70 -0.1
285,604 - H281DRAFT_02702 0.70 +0.2

Or see this region's nucleotide sequence