Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01883

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01882 and H281DRAFT_01883 are separated by 814 nucleotidesH281DRAFT_01883 and H281DRAFT_01884 overlap by 4 nucleotides H281DRAFT_01882: H281DRAFT_01882 - Lipid-binding SYLF domain-containing protein, at 800,291 to 800,878 _01882 H281DRAFT_01883: H281DRAFT_01883 - putative addiction module antidote protein, CC2985 family, at 801,693 to 801,926 _01883 H281DRAFT_01884: H281DRAFT_01884 - two-component system, chemotaxis family, CheB/CheR fusion protein, at 801,923 to 805,099 _01884 Position (kb) 801 802Strain fitness (log2 ratio) -2 -1 0 1at 801.022 kb on - strandat 801.450 kb on - strandat 801.466 kb on + strandat 801.466 kb on + strandat 801.654 kb on + strandat 801.655 kb on - strandat 801.655 kb on - strandat 801.766 kb on + strand, within H281DRAFT_01883at 801.957 kb on + strandat 802.154 kb on + strandat 802.154 kb on + strandat 802.155 kb on - strandat 802.155 kb on - strandat 802.179 kb on + strandat 802.584 kb on - strand, within H281DRAFT_01884at 802.697 kb on + strand, within H281DRAFT_01884at 802.698 kb on - strand, within H281DRAFT_01884at 802.698 kb on - strand, within H281DRAFT_01884at 802.698 kb on - strand, within H281DRAFT_01884at 802.698 kb on - strand, within H281DRAFT_01884

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
801,022 - -0.3
801,450 - -0.3
801,466 + +0.3
801,466 + +0.3
801,654 + +0.2
801,655 - -0.7
801,655 - -0.2
801,766 + H281DRAFT_01883 0.31 -0.8
801,957 + +0.0
802,154 + -0.1
802,154 + +0.2
802,155 - -0.2
802,155 - -2.0
802,179 + +0.3
802,584 - H281DRAFT_01884 0.21 +1.2
802,697 + H281DRAFT_01884 0.24 +0.4
802,698 - H281DRAFT_01884 0.24 +0.5
802,698 - H281DRAFT_01884 0.24 -0.9
802,698 - H281DRAFT_01884 0.24 -0.6
802,698 - H281DRAFT_01884 0.24 +0.4

Or see this region's nucleotide sequence