Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01309

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01307 and H281DRAFT_01308 overlap by 4 nucleotidesH281DRAFT_01308 and H281DRAFT_01309 are separated by 24 nucleotidesH281DRAFT_01309 and H281DRAFT_01310 are separated by 19 nucleotidesH281DRAFT_01310 and H281DRAFT_01311 are separated by 14 nucleotides H281DRAFT_01307: H281DRAFT_01307 - Transcriptional regulator of acetoin/glycerol metabolism, at 145,108 to 147,225 _01307 H281DRAFT_01308: H281DRAFT_01308 - flavoprotein, at 147,222 to 147,800 _01308 H281DRAFT_01309: H281DRAFT_01309 - dihydropteroate synthase-related protein, at 147,825 to 149,207 _01309 H281DRAFT_01310: H281DRAFT_01310 - ribulose-5-phosphate 3-epimerase (EC 5.1.3.1), at 149,227 to 149,937 _01310 H281DRAFT_01311: H281DRAFT_01311 - fructose-bisphosphate aldolase, at 149,952 to 150,989 _01311 Position (kb) 147 148 149 150Strain fitness (log2 ratio) -1 0 1at 147.217 kb on - strandat 147.486 kb on + strand, within H281DRAFT_01308at 147.486 kb on + strand, within H281DRAFT_01308at 147.487 kb on - strand, within H281DRAFT_01308at 147.670 kb on + strand, within H281DRAFT_01308at 147.724 kb on - strand, within H281DRAFT_01308at 148.090 kb on + strand, within H281DRAFT_01309at 148.090 kb on + strand, within H281DRAFT_01309at 148.323 kb on + strand, within H281DRAFT_01309at 148.571 kb on + strand, within H281DRAFT_01309at 149.814 kb on - strand, within H281DRAFT_01310at 149.827 kb on + strand, within H281DRAFT_01310at 149.828 kb on - strand, within H281DRAFT_01310

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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147,217 - +0.3
147,486 + H281DRAFT_01308 0.46 -1.3
147,486 + H281DRAFT_01308 0.46 -1.3
147,487 - H281DRAFT_01308 0.46 +0.4
147,670 + H281DRAFT_01308 0.77 +0.2
147,724 - H281DRAFT_01308 0.87 +0.3
148,090 + H281DRAFT_01309 0.19 -0.5
148,090 + H281DRAFT_01309 0.19 -0.8
148,323 + H281DRAFT_01309 0.36 +0.0
148,571 + H281DRAFT_01309 0.54 -1.0
149,814 - H281DRAFT_01310 0.83 +1.4
149,827 + H281DRAFT_01310 0.84 -0.3
149,828 - H281DRAFT_01310 0.85 +0.4

Or see this region's nucleotide sequence