Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_97 and HP15_98 are separated by 270 nucleotides HP15_98 and HP15_99 are separated by 367 nucleotides HP15_99 and HP15_100 overlap by 4 nucleotides
HP15_97: HP15_97 - cation efflux system protein, at 99,663 to 100,559
_97
HP15_98: HP15_98 - secreted protein with internal repeats-like protein, at 100,830 to 101,192
_98
HP15_99: HP15_99 - hypothetical protein, at 101,560 to 102,087
_99
HP15_100: HP15_100 - saccharopine dehydrogenase, at 102,084 to 103,295
_100
Position (kb) 100
101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 99.836 kb on + strand, within HP15_97 at 99.885 kb on - strand, within HP15_97 at 99.972 kb on + strand, within HP15_97 at 100.029 kb on - strand, within HP15_97 at 100.034 kb on - strand, within HP15_97 at 100.069 kb on - strand, within HP15_97 at 100.069 kb on - strand, within HP15_97 at 100.084 kb on - strand, within HP15_97 at 100.139 kb on - strand, within HP15_97 at 100.219 kb on + strand, within HP15_97 at 100.270 kb on - strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.297 kb on + strand, within HP15_97 at 100.297 kb on + strand, within HP15_97 at 100.331 kb on - strand, within HP15_97 at 100.464 kb on + strand, within HP15_97 at 100.513 kb on + strand at 100.530 kb on + strand at 100.536 kb on - strand at 100.538 kb on - strand at 100.637 kb on - strand at 100.653 kb on + strand at 100.653 kb on + strand at 100.749 kb on - strand at 100.798 kb on + strand at 100.863 kb on + strand at 100.863 kb on + strand at 100.873 kb on + strand, within HP15_98 at 100.873 kb on + strand, within HP15_98 at 100.906 kb on - strand, within HP15_98 at 100.997 kb on + strand, within HP15_98 at 101.007 kb on + strand, within HP15_98 at 101.007 kb on + strand, within HP15_98 at 101.130 kb on + strand, within HP15_98 at 101.199 kb on - strand at 101.259 kb on - strand at 101.281 kb on - strand at 101.352 kb on - strand at 101.364 kb on + strand at 101.481 kb on - strand at 101.504 kb on + strand at 101.517 kb on - strand at 101.565 kb on - strand at 101.581 kb on - strand at 101.665 kb on + strand, within HP15_99 at 101.732 kb on - strand, within HP15_99 at 101.747 kb on - strand, within HP15_99 at 101.782 kb on + strand, within HP15_99 at 101.862 kb on - strand, within HP15_99 at 101.914 kb on + strand, within HP15_99 at 101.918 kb on - strand, within HP15_99 at 101.946 kb on + strand, within HP15_99 at 101.946 kb on + strand, within HP15_99 at 101.983 kb on + strand, within HP15_99 at 101.983 kb on + strand, within HP15_99 at 101.983 kb on + strand, within HP15_99 at 101.991 kb on - strand, within HP15_99 at 101.991 kb on - strand, within HP15_99 at 101.991 kb on - strand, within HP15_99 at 102.039 kb on - strand at 102.047 kb on - strand at 102.047 kb on - strand at 102.057 kb on - strand at 102.062 kb on + strand at 102.082 kb on + strand at 102.132 kb on + strand at 102.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 99,836 + HP15_97 0.19 +0.3 99,885 - HP15_97 0.25 -0.6 99,972 + HP15_97 0.34 -0.0 100,029 - HP15_97 0.41 -0.1 100,034 - HP15_97 0.41 +0.1 100,069 - HP15_97 0.45 -0.0 100,069 - HP15_97 0.45 -0.4 100,084 - HP15_97 0.47 -0.7 100,139 - HP15_97 0.53 -0.3 100,219 + HP15_97 0.62 -0.1 100,270 - HP15_97 0.68 -0.3 100,289 + HP15_97 0.70 +0.2 100,289 + HP15_97 0.70 -0.7 100,289 + HP15_97 0.70 +0.5 100,289 + HP15_97 0.70 -0.4 100,289 + HP15_97 0.70 +0.9 100,289 + HP15_97 0.70 -1.1 100,289 + HP15_97 0.70 -0.5 100,297 + HP15_97 0.71 +0.5 100,297 + HP15_97 0.71 +0.0 100,331 - HP15_97 0.74 +0.4 100,464 + HP15_97 0.89 +1.0 100,513 + +0.2 100,530 + +0.1 100,536 - +0.3 100,538 - +0.2 100,637 - -0.0 100,653 + -0.1 100,653 + -0.4 100,749 - +1.2 100,798 + -0.5 100,863 + -0.5 100,863 + +1.0 100,873 + HP15_98 0.12 +1.6 100,873 + HP15_98 0.12 +1.1 100,906 - HP15_98 0.21 -1.1 100,997 + HP15_98 0.46 -0.9 101,007 + HP15_98 0.49 +3.3 101,007 + HP15_98 0.49 -0.0 101,130 + HP15_98 0.83 -1.1 101,199 - +0.3 101,259 - -0.6 101,281 - -0.4 101,352 - -1.1 101,364 + +1.9 101,481 - +0.5 101,504 + +1.6 101,517 - +0.2 101,565 - -0.3 101,581 - -0.4 101,665 + HP15_99 0.20 +0.2 101,732 - HP15_99 0.33 +0.3 101,747 - HP15_99 0.35 -0.8 101,782 + HP15_99 0.42 -1.0 101,862 - HP15_99 0.57 +0.1 101,914 + HP15_99 0.67 +1.5 101,918 - HP15_99 0.68 -0.4 101,946 + HP15_99 0.73 -0.9 101,946 + HP15_99 0.73 +0.2 101,983 + HP15_99 0.80 +0.3 101,983 + HP15_99 0.80 -0.7 101,983 + HP15_99 0.80 +0.1 101,991 - HP15_99 0.82 -0.3 101,991 - HP15_99 0.82 +0.1 101,991 - HP15_99 0.82 -3.0 102,039 - +1.1 102,047 - -1.1 102,047 - +0.2 102,057 - +0.7 102,062 + +0.3 102,082 + -2.7 102,132 + -0.6 102,183 - -0.1
Or see this region's nucleotide sequence