Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_942 and HP15_943 are separated by 75 nucleotides HP15_943 and HP15_944 are separated by 238 nucleotides
HP15_942: HP15_942 - glutamate-putrescine ligase, at 957,030 to 958,394
_942
HP15_943: HP15_943 - aldehyde dehydrogenase family protein, at 958,470 to 959,987
_943
HP15_944: HP15_944 - FAD dependent oxidoreductase, at 960,226 to 961,452
_944
Position (kb) 958
959
960 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 957.548 kb on + strand, within HP15_942 at 957.607 kb on + strand, within HP15_942 at 957.683 kb on - strand, within HP15_942 at 957.750 kb on + strand, within HP15_942 at 957.813 kb on + strand, within HP15_942 at 957.843 kb on + strand, within HP15_942 at 957.881 kb on + strand, within HP15_942 at 957.950 kb on - strand, within HP15_942 at 958.165 kb on + strand, within HP15_942 at 958.173 kb on - strand, within HP15_942 at 958.173 kb on - strand, within HP15_942 at 958.184 kb on - strand, within HP15_942 at 958.221 kb on - strand, within HP15_942 at 958.462 kb on + strand at 958.462 kb on + strand at 958.551 kb on - strand at 958.634 kb on - strand, within HP15_943 at 958.796 kb on - strand, within HP15_943 at 958.807 kb on + strand, within HP15_943 at 959.070 kb on + strand, within HP15_943 at 959.208 kb on - strand, within HP15_943 at 959.261 kb on - strand, within HP15_943 at 959.341 kb on + strand, within HP15_943 at 959.349 kb on - strand, within HP15_943 at 959.360 kb on + strand, within HP15_943 at 959.483 kb on + strand, within HP15_943 at 959.496 kb on - strand, within HP15_943 at 959.499 kb on - strand, within HP15_943 at 959.567 kb on + strand, within HP15_943 at 959.642 kb on + strand, within HP15_943 at 959.691 kb on - strand, within HP15_943 at 959.721 kb on - strand, within HP15_943 at 959.738 kb on + strand, within HP15_943 at 959.799 kb on - strand, within HP15_943 at 959.968 kb on - strand at 960.002 kb on + strand at 960.002 kb on + strand at 960.094 kb on + strand at 960.094 kb on + strand at 960.094 kb on + strand at 960.102 kb on - strand at 960.102 kb on - strand at 960.102 kb on - strand at 960.245 kb on + strand at 960.246 kb on + strand at 960.288 kb on - strand at 960.309 kb on - strand at 960.365 kb on - strand, within HP15_944 at 960.420 kb on - strand, within HP15_944 at 960.422 kb on + strand, within HP15_944 at 960.430 kb on - strand, within HP15_944 at 960.493 kb on + strand, within HP15_944 at 960.512 kb on - strand, within HP15_944 at 960.566 kb on - strand, within HP15_944 at 960.571 kb on - strand, within HP15_944 at 960.571 kb on - strand, within HP15_944 at 960.625 kb on - strand, within HP15_944 at 960.713 kb on + strand, within HP15_944 at 960.810 kb on + strand, within HP15_944 at 960.833 kb on - strand, within HP15_944
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 957,548 + HP15_942 0.38 -0.6 957,607 + HP15_942 0.42 +0.7 957,683 - HP15_942 0.48 -0.1 957,750 + HP15_942 0.53 -1.0 957,813 + HP15_942 0.57 +0.8 957,843 + HP15_942 0.60 -0.7 957,881 + HP15_942 0.62 +0.6 957,950 - HP15_942 0.67 -0.1 958,165 + HP15_942 0.83 -0.5 958,173 - HP15_942 0.84 +2.5 958,173 - HP15_942 0.84 -0.2 958,184 - HP15_942 0.85 +3.0 958,221 - HP15_942 0.87 -3.1 958,462 + -1.0 958,462 + -1.3 958,551 - -0.9 958,634 - HP15_943 0.11 -0.3 958,796 - HP15_943 0.21 +0.1 958,807 + HP15_943 0.22 -0.5 959,070 + HP15_943 0.40 -1.0 959,208 - HP15_943 0.49 -0.6 959,261 - HP15_943 0.52 -0.7 959,341 + HP15_943 0.57 -0.9 959,349 - HP15_943 0.58 +0.2 959,360 + HP15_943 0.59 +0.3 959,483 + HP15_943 0.67 +0.1 959,496 - HP15_943 0.68 -0.7 959,499 - HP15_943 0.68 +0.7 959,567 + HP15_943 0.72 +0.7 959,642 + HP15_943 0.77 +0.5 959,691 - HP15_943 0.80 -0.6 959,721 - HP15_943 0.82 -1.0 959,738 + HP15_943 0.84 -0.3 959,799 - HP15_943 0.88 -0.5 959,968 - -0.2 960,002 + -0.2 960,002 + -1.5 960,094 + +0.1 960,094 + +0.2 960,094 + -0.3 960,102 - -3.1 960,102 - +1.4 960,102 - -0.4 960,245 + +0.1 960,246 + +0.3 960,288 - +0.3 960,309 - -1.1 960,365 - HP15_944 0.11 +0.1 960,420 - HP15_944 0.16 -0.4 960,422 + HP15_944 0.16 -0.1 960,430 - HP15_944 0.17 +0.3 960,493 + HP15_944 0.22 +0.3 960,512 - HP15_944 0.23 -0.0 960,566 - HP15_944 0.28 -0.4 960,571 - HP15_944 0.28 -0.1 960,571 - HP15_944 0.28 -0.5 960,625 - HP15_944 0.33 -2.6 960,713 + HP15_944 0.40 -0.4 960,810 + HP15_944 0.48 -1.7 960,833 - HP15_944 0.49 +0.1
Or see this region's nucleotide sequence