Strain Fitness in Marinobacter adhaerens HP15 around HP15_91

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_89 and HP15_90 are separated by 61 nucleotidesHP15_90 and HP15_91 overlap by 4 nucleotidesHP15_91 and HP15_92 are separated by 22 nucleotidesHP15_92 and HP15_93 are separated by 26 nucleotidesHP15_93 and HP15_94 are separated by 42 nucleotides HP15_89: HP15_89 - transcriptional regulator, MerR family protein, at 94,714 to 95,127 _89 HP15_90: HP15_90 - electron transport protein SCO1/SenC, at 95,189 to 95,812 _90 HP15_91: HP15_91 - conserved hypothetical protein, membrane, at 95,809 to 96,651 _91 HP15_92: HP15_92 - DSBA oxidoreductase, at 96,674 to 97,312 _92 HP15_93: HP15_93 - hypothetical protein, at 97,339 to 97,446 _93 HP15_94: HP15_94 - sodium: bile acid symporter family protein-like protein, at 97,489 to 98,061 _94 Position (kb) 95 96 97Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 94.900 kb on - strand, within HP15_89at 94.912 kb on - strand, within HP15_89at 95.052 kb on - strand, within HP15_89at 95.062 kb on - strand, within HP15_89at 95.110 kb on + strandat 95.120 kb on - strandat 95.120 kb on - strandat 95.147 kb on - strandat 95.148 kb on + strandat 95.148 kb on + strandat 95.148 kb on + strandat 95.148 kb on + strandat 95.148 kb on + strandat 95.148 kb on + strandat 95.158 kb on + strandat 95.166 kb on - strandat 95.169 kb on + strandat 95.366 kb on - strand, within HP15_90at 95.384 kb on + strand, within HP15_90at 95.392 kb on - strand, within HP15_90at 95.624 kb on - strand, within HP15_90at 95.640 kb on - strand, within HP15_90at 95.758 kb on + strandat 95.758 kb on + strandat 95.889 kb on - strandat 95.918 kb on + strand, within HP15_91at 95.919 kb on + strand, within HP15_91at 95.921 kb on + strand, within HP15_91at 95.921 kb on + strand, within HP15_91at 95.929 kb on - strand, within HP15_91at 95.929 kb on - strand, within HP15_91at 96.139 kb on + strand, within HP15_91at 96.184 kb on + strand, within HP15_91at 96.192 kb on - strand, within HP15_91at 96.274 kb on + strand, within HP15_91at 96.282 kb on - strand, within HP15_91at 96.296 kb on + strand, within HP15_91at 96.322 kb on + strand, within HP15_91at 96.330 kb on - strand, within HP15_91at 96.330 kb on - strand, within HP15_91at 96.330 kb on - strand, within HP15_91at 96.330 kb on - strand, within HP15_91at 96.371 kb on + strand, within HP15_91at 96.371 kb on + strand, within HP15_91at 96.379 kb on - strand, within HP15_91at 96.398 kb on - strand, within HP15_91at 96.450 kb on - strand, within HP15_91at 96.469 kb on + strand, within HP15_91at 96.480 kb on + strand, within HP15_91at 96.480 kb on + strand, within HP15_91at 96.488 kb on - strand, within HP15_91at 96.498 kb on + strand, within HP15_91at 96.506 kb on - strand, within HP15_91at 96.506 kb on - strand, within HP15_91at 96.527 kb on + strand, within HP15_91at 96.531 kb on - strand, within HP15_91at 96.538 kb on + strand, within HP15_91at 96.541 kb on - strand, within HP15_91at 96.682 kb on - strandat 96.691 kb on + strandat 96.693 kb on - strandat 96.707 kb on + strandat 96.723 kb on - strandat 96.723 kb on - strandat 96.754 kb on + strand, within HP15_92at 96.794 kb on - strand, within HP15_92at 96.835 kb on + strand, within HP15_92at 96.840 kb on + strand, within HP15_92at 96.844 kb on - strand, within HP15_92at 96.845 kb on + strand, within HP15_92at 96.904 kb on + strand, within HP15_92at 96.912 kb on - strand, within HP15_92at 96.913 kb on + strand, within HP15_92at 96.928 kb on - strand, within HP15_92at 96.947 kb on + strand, within HP15_92at 96.955 kb on - strand, within HP15_92at 97.014 kb on - strand, within HP15_92at 97.032 kb on - strand, within HP15_92at 97.034 kb on + strand, within HP15_92at 97.039 kb on + strand, within HP15_92at 97.053 kb on - strand, within HP15_92at 97.088 kb on + strand, within HP15_92at 97.158 kb on + strand, within HP15_92at 97.305 kb on - strandat 97.305 kb on - strandat 97.310 kb on + strandat 97.336 kb on + strandat 97.429 kb on + strand, within HP15_93at 97.457 kb on + strandat 97.457 kb on + strandat 97.465 kb on - strandat 97.494 kb on - strandat 97.576 kb on + strand, within HP15_94at 97.649 kb on - strand, within HP15_94at 97.649 kb on - strand, within HP15_94

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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94,900 - HP15_89 0.45 +1.2
94,912 - HP15_89 0.48 +0.4
95,052 - HP15_89 0.82 +1.1
95,062 - HP15_89 0.84 +0.1
95,110 + +0.3
95,120 - -0.3
95,120 - +0.0
95,147 - -0.5
95,148 + +1.0
95,148 + -0.5
95,148 + -0.9
95,148 + -0.1
95,148 + -0.7
95,148 + +0.0
95,158 + -0.2
95,166 - -0.5
95,169 + +0.3
95,366 - HP15_90 0.28 -0.6
95,384 + HP15_90 0.31 -0.5
95,392 - HP15_90 0.33 +0.9
95,624 - HP15_90 0.70 -0.5
95,640 - HP15_90 0.72 +0.6
95,758 + -0.5
95,758 + -0.9
95,889 - -0.3
95,918 + HP15_91 0.13 +0.1
95,919 + HP15_91 0.13 +0.5
95,921 + HP15_91 0.13 -0.8
95,921 + HP15_91 0.13 +0.5
95,929 - HP15_91 0.14 +1.5
95,929 - HP15_91 0.14 +0.2
96,139 + HP15_91 0.39 +3.6
96,184 + HP15_91 0.44 +0.1
96,192 - HP15_91 0.45 -1.0
96,274 + HP15_91 0.55 +1.2
96,282 - HP15_91 0.56 -0.6
96,296 + HP15_91 0.58 -0.1
96,322 + HP15_91 0.61 +0.3
96,330 - HP15_91 0.62 +0.7
96,330 - HP15_91 0.62 +0.3
96,330 - HP15_91 0.62 -1.3
96,330 - HP15_91 0.62 -0.4
96,371 + HP15_91 0.67 +0.3
96,371 + HP15_91 0.67 +0.9
96,379 - HP15_91 0.68 -0.2
96,398 - HP15_91 0.70 +0.0
96,450 - HP15_91 0.76 -0.1
96,469 + HP15_91 0.78 +0.2
96,480 + HP15_91 0.80 -0.0
96,480 + HP15_91 0.80 +0.1
96,488 - HP15_91 0.81 -0.5
96,498 + HP15_91 0.82 -1.7
96,506 - HP15_91 0.83 -1.7
96,506 - HP15_91 0.83 +0.7
96,527 + HP15_91 0.85 -0.3
96,531 - HP15_91 0.86 +0.4
96,538 + HP15_91 0.86 +1.3
96,541 - HP15_91 0.87 -0.5
96,682 - -0.1
96,691 + -0.1
96,693 - -2.4
96,707 + +0.4
96,723 - +0.9
96,723 - +0.6
96,754 + HP15_92 0.13 -1.1
96,794 - HP15_92 0.19 +0.1
96,835 + HP15_92 0.25 -0.5
96,840 + HP15_92 0.26 -0.2
96,844 - HP15_92 0.27 -0.3
96,845 + HP15_92 0.27 -0.4
96,904 + HP15_92 0.36 -0.1
96,912 - HP15_92 0.37 +0.2
96,913 + HP15_92 0.37 +0.8
96,928 - HP15_92 0.40 -0.4
96,947 + HP15_92 0.43 +0.4
96,955 - HP15_92 0.44 +0.3
97,014 - HP15_92 0.53 -0.1
97,032 - HP15_92 0.56 -0.9
97,034 + HP15_92 0.56 +4.6
97,039 + HP15_92 0.57 -0.1
97,053 - HP15_92 0.59 +0.8
97,088 + HP15_92 0.65 -0.1
97,158 + HP15_92 0.76 -0.1
97,305 - -0.1
97,305 - -0.1
97,310 + -0.5
97,336 + -1.0
97,429 + HP15_93 0.83 -2.7
97,457 + +0.2
97,457 + +0.4
97,465 - -1.7
97,494 - -1.4
97,576 + HP15_94 0.15 -1.7
97,649 - HP15_94 0.28 +0.5
97,649 - HP15_94 0.28 +1.3

Or see this region's nucleotide sequence