Strain Fitness in Marinobacter adhaerens HP15 around HP15_86

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_84 and HP15_85 are separated by 57 nucleotidesHP15_85 and HP15_86 are separated by 104 nucleotidesHP15_86 and HP15_87 overlap by 4 nucleotidesHP15_87 and HP15_88 overlap by 4 nucleotides HP15_84: HP15_84 - conserved hypothetical protein, at 91,603 to 91,959 _84 HP15_85: HP15_85 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 92,017 to 92,715 _85 HP15_86: HP15_86 - DSBA oxidoreductase, at 92,820 to 93,497 _86 HP15_87: HP15_87 - disulfide oxidoreductase C BdbC, at 93,494 to 93,928 _87 HP15_88: HP15_88 - cation efflux protein, at 93,925 to 94,650 _88 Position (kb) 92 93 94Strain fitness (log2 ratio) -1 0 1 2at 91.820 kb on - strand, within HP15_84at 91.892 kb on + strand, within HP15_84at 91.969 kb on - strandat 92.159 kb on - strand, within HP15_85at 92.272 kb on + strand, within HP15_85at 92.319 kb on + strand, within HP15_85at 92.360 kb on + strand, within HP15_85at 92.368 kb on - strand, within HP15_85at 92.368 kb on - strand, within HP15_85at 92.520 kb on + strand, within HP15_85at 92.520 kb on + strand, within HP15_85at 92.540 kb on + strand, within HP15_85at 92.547 kb on + strand, within HP15_85at 92.591 kb on - strand, within HP15_85at 92.613 kb on + strand, within HP15_85at 92.619 kb on - strand, within HP15_85at 92.661 kb on + strandat 92.738 kb on - strandat 92.796 kb on - strandat 92.820 kb on + strandat 92.844 kb on + strandat 92.844 kb on + strandat 92.852 kb on - strandat 92.854 kb on + strandat 92.880 kb on - strandat 92.919 kb on + strand, within HP15_86at 92.976 kb on - strand, within HP15_86at 93.009 kb on - strand, within HP15_86at 93.011 kb on + strand, within HP15_86at 93.011 kb on + strand, within HP15_86at 93.011 kb on + strand, within HP15_86at 93.019 kb on - strand, within HP15_86at 93.037 kb on + strand, within HP15_86at 93.037 kb on + strand, within HP15_86at 93.037 kb on + strand, within HP15_86at 93.038 kb on + strand, within HP15_86at 93.045 kb on - strand, within HP15_86at 93.053 kb on + strand, within HP15_86at 93.061 kb on - strand, within HP15_86at 93.186 kb on - strand, within HP15_86at 93.288 kb on + strand, within HP15_86at 93.308 kb on + strand, within HP15_86at 93.315 kb on - strand, within HP15_86at 93.359 kb on + strand, within HP15_86at 93.640 kb on - strand, within HP15_87at 93.640 kb on - strand, within HP15_87at 93.703 kb on - strand, within HP15_87at 93.720 kb on - strand, within HP15_87at 93.798 kb on + strand, within HP15_87at 93.811 kb on - strand, within HP15_87at 93.813 kb on + strand, within HP15_87at 93.995 kb on - strandat 94.000 kb on + strand, within HP15_88at 94.002 kb on + strand, within HP15_88at 94.127 kb on - strand, within HP15_88at 94.137 kb on + strand, within HP15_88at 94.139 kb on + strand, within HP15_88at 94.145 kb on - strand, within HP15_88at 94.147 kb on - strand, within HP15_88at 94.147 kb on - strand, within HP15_88at 94.153 kb on + strand, within HP15_88at 94.161 kb on - strand, within HP15_88at 94.210 kb on + strand, within HP15_88at 94.235 kb on - strand, within HP15_88at 94.260 kb on + strand, within HP15_88at 94.315 kb on - strand, within HP15_88at 94.410 kb on - strand, within HP15_88

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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91,820 - HP15_84 0.61 +1.5
91,892 + HP15_84 0.81 +0.8
91,969 - +1.5
92,159 - HP15_85 0.20 +0.6
92,272 + HP15_85 0.36 -0.8
92,319 + HP15_85 0.43 +0.3
92,360 + HP15_85 0.49 -0.4
92,368 - HP15_85 0.50 -0.8
92,368 - HP15_85 0.50 +0.4
92,520 + HP15_85 0.72 +0.7
92,520 + HP15_85 0.72 +0.0
92,540 + HP15_85 0.75 +2.1
92,547 + HP15_85 0.76 +0.7
92,591 - HP15_85 0.82 -0.0
92,613 + HP15_85 0.85 +0.3
92,619 - HP15_85 0.86 +1.6
92,661 + +0.1
92,738 - +0.2
92,796 - +0.8
92,820 + +0.4
92,844 + +0.1
92,844 + +0.5
92,852 - -0.6
92,854 + -0.5
92,880 - -0.1
92,919 + HP15_86 0.15 +0.2
92,976 - HP15_86 0.23 +1.9
93,009 - HP15_86 0.28 -0.1
93,011 + HP15_86 0.28 -0.1
93,011 + HP15_86 0.28 +0.6
93,011 + HP15_86 0.28 -0.1
93,019 - HP15_86 0.29 -1.0
93,037 + HP15_86 0.32 -0.3
93,037 + HP15_86 0.32 -0.0
93,037 + HP15_86 0.32 -0.3
93,038 + HP15_86 0.32 -0.3
93,045 - HP15_86 0.33 -0.6
93,053 + HP15_86 0.34 -0.3
93,061 - HP15_86 0.36 +0.1
93,186 - HP15_86 0.54 -0.2
93,288 + HP15_86 0.69 -0.8
93,308 + HP15_86 0.72 -0.7
93,315 - HP15_86 0.73 -0.1
93,359 + HP15_86 0.79 -0.5
93,640 - HP15_87 0.34 +0.2
93,640 - HP15_87 0.34 -0.2
93,703 - HP15_87 0.48 +0.1
93,720 - HP15_87 0.52 +0.1
93,798 + HP15_87 0.70 +0.5
93,811 - HP15_87 0.73 +0.1
93,813 + HP15_87 0.73 +2.0
93,995 - -0.4
94,000 + HP15_88 0.10 +0.3
94,002 + HP15_88 0.11 -0.3
94,127 - HP15_88 0.28 -0.3
94,137 + HP15_88 0.29 -0.4
94,139 + HP15_88 0.29 -0.1
94,145 - HP15_88 0.30 -0.4
94,147 - HP15_88 0.31 -0.7
94,147 - HP15_88 0.31 +0.2
94,153 + HP15_88 0.31 -0.1
94,161 - HP15_88 0.33 -0.1
94,210 + HP15_88 0.39 +0.5
94,235 - HP15_88 0.43 +0.6
94,260 + HP15_88 0.46 +1.2
94,315 - HP15_88 0.54 +0.1
94,410 - HP15_88 0.67 +0.1

Or see this region's nucleotide sequence