Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_84 and HP15_85 are separated by 57 nucleotides HP15_85 and HP15_86 are separated by 104 nucleotides HP15_86 and HP15_87 overlap by 4 nucleotides HP15_87 and HP15_88 overlap by 4 nucleotides
HP15_84: HP15_84 - conserved hypothetical protein, at 91,603 to 91,959
_84
HP15_85: HP15_85 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 92,017 to 92,715
_85
HP15_86: HP15_86 - DSBA oxidoreductase, at 92,820 to 93,497
_86
HP15_87: HP15_87 - disulfide oxidoreductase C BdbC, at 93,494 to 93,928
_87
HP15_88: HP15_88 - cation efflux protein, at 93,925 to 94,650
_88
Position (kb)
92
93
94 Strain fitness (log2 ratio)
-1
0
1
2 at 91.820 kb on - strand, within HP15_84 at 91.892 kb on + strand, within HP15_84 at 91.969 kb on - strand at 92.159 kb on - strand, within HP15_85 at 92.272 kb on + strand, within HP15_85 at 92.319 kb on + strand, within HP15_85 at 92.360 kb on + strand, within HP15_85 at 92.368 kb on - strand, within HP15_85 at 92.368 kb on - strand, within HP15_85 at 92.520 kb on + strand, within HP15_85 at 92.520 kb on + strand, within HP15_85 at 92.540 kb on + strand, within HP15_85 at 92.547 kb on + strand, within HP15_85 at 92.591 kb on - strand, within HP15_85 at 92.613 kb on + strand, within HP15_85 at 92.619 kb on - strand, within HP15_85 at 92.661 kb on + strand at 92.738 kb on - strand at 92.796 kb on - strand at 92.820 kb on + strand at 92.844 kb on + strand at 92.844 kb on + strand at 92.852 kb on - strand at 92.854 kb on + strand at 92.880 kb on - strand at 92.919 kb on + strand, within HP15_86 at 92.976 kb on - strand, within HP15_86 at 93.009 kb on - strand, within HP15_86 at 93.011 kb on + strand, within HP15_86 at 93.011 kb on + strand, within HP15_86 at 93.011 kb on + strand, within HP15_86 at 93.019 kb on - strand, within HP15_86 at 93.037 kb on + strand, within HP15_86 at 93.037 kb on + strand, within HP15_86 at 93.037 kb on + strand, within HP15_86 at 93.038 kb on + strand, within HP15_86 at 93.045 kb on - strand, within HP15_86 at 93.053 kb on + strand, within HP15_86 at 93.061 kb on - strand, within HP15_86 at 93.186 kb on - strand, within HP15_86 at 93.288 kb on + strand, within HP15_86 at 93.308 kb on + strand, within HP15_86 at 93.315 kb on - strand, within HP15_86 at 93.359 kb on + strand, within HP15_86 at 93.640 kb on - strand, within HP15_87 at 93.640 kb on - strand, within HP15_87 at 93.703 kb on - strand, within HP15_87 at 93.720 kb on - strand, within HP15_87 at 93.798 kb on + strand, within HP15_87 at 93.811 kb on - strand, within HP15_87 at 93.813 kb on + strand, within HP15_87 at 93.995 kb on - strand at 94.000 kb on + strand, within HP15_88 at 94.002 kb on + strand, within HP15_88 at 94.127 kb on - strand, within HP15_88 at 94.137 kb on + strand, within HP15_88 at 94.139 kb on + strand, within HP15_88 at 94.145 kb on - strand, within HP15_88 at 94.147 kb on - strand, within HP15_88 at 94.147 kb on - strand, within HP15_88 at 94.153 kb on + strand, within HP15_88 at 94.161 kb on - strand, within HP15_88 at 94.210 kb on + strand, within HP15_88 at 94.235 kb on - strand, within HP15_88 at 94.260 kb on + strand, within HP15_88 at 94.315 kb on - strand, within HP15_88 at 94.410 kb on - strand, within HP15_88
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 91,820 - HP15_84 0.61 +1.5 91,892 + HP15_84 0.81 +0.8 91,969 - +1.5 92,159 - HP15_85 0.20 +0.6 92,272 + HP15_85 0.36 -0.8 92,319 + HP15_85 0.43 +0.3 92,360 + HP15_85 0.49 -0.4 92,368 - HP15_85 0.50 -0.8 92,368 - HP15_85 0.50 +0.4 92,520 + HP15_85 0.72 +0.7 92,520 + HP15_85 0.72 +0.0 92,540 + HP15_85 0.75 +2.1 92,547 + HP15_85 0.76 +0.7 92,591 - HP15_85 0.82 -0.0 92,613 + HP15_85 0.85 +0.3 92,619 - HP15_85 0.86 +1.6 92,661 + +0.1 92,738 - +0.2 92,796 - +0.8 92,820 + +0.4 92,844 + +0.1 92,844 + +0.5 92,852 - -0.6 92,854 + -0.5 92,880 - -0.1 92,919 + HP15_86 0.15 +0.2 92,976 - HP15_86 0.23 +1.9 93,009 - HP15_86 0.28 -0.1 93,011 + HP15_86 0.28 -0.1 93,011 + HP15_86 0.28 +0.6 93,011 + HP15_86 0.28 -0.1 93,019 - HP15_86 0.29 -1.0 93,037 + HP15_86 0.32 -0.3 93,037 + HP15_86 0.32 -0.0 93,037 + HP15_86 0.32 -0.3 93,038 + HP15_86 0.32 -0.3 93,045 - HP15_86 0.33 -0.6 93,053 + HP15_86 0.34 -0.3 93,061 - HP15_86 0.36 +0.1 93,186 - HP15_86 0.54 -0.2 93,288 + HP15_86 0.69 -0.8 93,308 + HP15_86 0.72 -0.7 93,315 - HP15_86 0.73 -0.1 93,359 + HP15_86 0.79 -0.5 93,640 - HP15_87 0.34 +0.2 93,640 - HP15_87 0.34 -0.2 93,703 - HP15_87 0.48 +0.1 93,720 - HP15_87 0.52 +0.1 93,798 + HP15_87 0.70 +0.5 93,811 - HP15_87 0.73 +0.1 93,813 + HP15_87 0.73 +2.0 93,995 - -0.4 94,000 + HP15_88 0.10 +0.3 94,002 + HP15_88 0.11 -0.3 94,127 - HP15_88 0.28 -0.3 94,137 + HP15_88 0.29 -0.4 94,139 + HP15_88 0.29 -0.1 94,145 - HP15_88 0.30 -0.4 94,147 - HP15_88 0.31 -0.7 94,147 - HP15_88 0.31 +0.2 94,153 + HP15_88 0.31 -0.1 94,161 - HP15_88 0.33 -0.1 94,210 + HP15_88 0.39 +0.5 94,235 - HP15_88 0.43 +0.6 94,260 + HP15_88 0.46 +1.2 94,315 - HP15_88 0.54 +0.1 94,410 - HP15_88 0.67 +0.1
Or see this region's nucleotide sequence