Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08500 and PGA1_c08510 are separated by 13 nucleotides PGA1_c08510 and PGA1_c08520 overlap by 8 nucleotides PGA1_c08520 and PGA1_c08530 overlap by 4 nucleotides PGA1_c08530 and PGA1_c08540 are separated by 259 nucleotides
PGA1_c08500: PGA1_c08500 - hypothetical protein, at 878,152 to 878,655
_c08500
PGA1_c08510: PGA1_c08510 - RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup), at 878,669 to 879,328
_c08510
PGA1_c08520: PGA1_c08520 - hypothetical protein, at 879,321 to 879,797
_c08520
PGA1_c08530: PGA1_c08530 - Predicted integral membrane protein, at 879,794 to 880,273
_c08530
PGA1_c08540: PGA1_c08540 - response regulator PleD, at 880,533 to 881,963
_c08540
Position (kb) 879
880 Strain fitness (log2 ratio) -2
-1
0
1 at 878.329 kb on + strand, within PGA1_c08500 at 878.401 kb on + strand, within PGA1_c08500 at 878.401 kb on + strand, within PGA1_c08500 at 878.404 kb on - strand, within PGA1_c08500 at 878.409 kb on - strand, within PGA1_c08500 at 878.474 kb on + strand, within PGA1_c08500 at 878.512 kb on + strand, within PGA1_c08500 at 878.520 kb on - strand, within PGA1_c08500 at 878.553 kb on - strand, within PGA1_c08500 at 878.606 kb on + strand at 878.621 kb on + strand at 878.719 kb on - strand at 878.736 kb on - strand, within PGA1_c08510 at 878.759 kb on + strand, within PGA1_c08510 at 879.305 kb on + strand at 879.560 kb on + strand, within PGA1_c08520 at 880.473 kb on - strand at 880.632 kb on + strand at 880.678 kb on + strand, within PGA1_c08540 at 880.678 kb on + strand, within PGA1_c08540
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 878,329 + PGA1_c08500 0.35 -1.2 878,401 + PGA1_c08500 0.49 -1.1 878,401 + PGA1_c08500 0.49 +0.3 878,404 - PGA1_c08500 0.50 -1.4 878,409 - PGA1_c08500 0.51 -0.4 878,474 + PGA1_c08500 0.64 +0.4 878,512 + PGA1_c08500 0.71 +1.2 878,520 - PGA1_c08500 0.73 +0.7 878,553 - PGA1_c08500 0.80 -0.9 878,606 + +0.7 878,621 + +0.5 878,719 - +0.9 878,736 - PGA1_c08510 0.10 -0.7 878,759 + PGA1_c08510 0.14 -1.8 879,305 + +0.8 879,560 + PGA1_c08520 0.50 +1.3 880,473 - -0.5 880,632 + -0.4 880,678 + PGA1_c08540 0.10 -2.7 880,678 + PGA1_c08540 0.10 +0.5
Or see this region's nucleotide sequence