Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_678 and HP15_679 are separated by 9 nucleotides HP15_679 and HP15_680 are separated by 76 nucleotides HP15_680 and HP15_681 are separated by 86 nucleotides HP15_681 and HP15_682 overlap by 11 nucleotides
HP15_678: HP15_678 - conserved hypothetical protein, at 696,544 to 697,077
_678
HP15_679: HP15_679 - conserved hypothetical protein, at 697,087 to 697,344
_679
HP15_680: HP15_680 - conserved hypothetical protein, at 697,421 to 697,642
_680
HP15_681: HP15_681 - conserved hypothetical protein, at 697,729 to 698,403
_681
HP15_682: HP15_682 - replication protein O, at 698,393 to 699,406
_682
HP15_683: HP15_683 - conserved hypothetical protein, at 699,403 to 700,191
_683
Position (kb) 697
698
699 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 696.736 kb on - strand, within HP15_678 at 696.784 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.797 kb on - strand, within HP15_678 at 696.914 kb on + strand, within HP15_678 at 696.935 kb on + strand, within HP15_678 at 696.994 kb on + strand, within HP15_678 at 697.021 kb on - strand, within HP15_678 at 697.022 kb on + strand, within HP15_678 at 697.084 kb on + strand at 697.092 kb on - strand at 697.167 kb on - strand, within HP15_679 at 697.245 kb on + strand, within HP15_679 at 697.253 kb on - strand, within HP15_679 at 697.351 kb on - strand at 697.391 kb on + strand at 697.670 kb on + strand at 697.747 kb on - strand at 697.793 kb on - strand at 697.808 kb on - strand, within HP15_681 at 697.844 kb on - strand, within HP15_681 at 697.919 kb on + strand, within HP15_681 at 697.934 kb on - strand, within HP15_681 at 697.955 kb on - strand, within HP15_681 at 697.969 kb on - strand, within HP15_681 at 698.119 kb on - strand, within HP15_681 at 698.153 kb on + strand, within HP15_681 at 698.153 kb on + strand, within HP15_681 at 698.158 kb on + strand, within HP15_681 at 698.165 kb on + strand, within HP15_681 at 698.185 kb on + strand, within HP15_681 at 698.193 kb on - strand, within HP15_681 at 698.213 kb on + strand, within HP15_681 at 698.213 kb on + strand, within HP15_681 at 698.234 kb on + strand, within HP15_681 at 698.242 kb on - strand, within HP15_681 at 698.329 kb on - strand, within HP15_681 at 698.342 kb on + strand at 698.358 kb on + strand at 698.398 kb on + strand at 698.405 kb on + strand at 698.406 kb on - strand at 698.497 kb on + strand, within HP15_682 at 698.523 kb on - strand, within HP15_682 at 698.573 kb on + strand, within HP15_682 at 698.612 kb on + strand, within HP15_682 at 698.620 kb on + strand, within HP15_682 at 698.675 kb on + strand, within HP15_682 at 698.690 kb on - strand, within HP15_682 at 698.774 kb on + strand, within HP15_682 at 698.803 kb on + strand, within HP15_682 at 698.808 kb on + strand, within HP15_682 at 698.816 kb on - strand, within HP15_682 at 698.816 kb on - strand, within HP15_682 at 698.848 kb on - strand, within HP15_682 at 698.848 kb on - strand, within HP15_682 at 698.891 kb on - strand, within HP15_682 at 698.915 kb on - strand, within HP15_682 at 698.915 kb on - strand, within HP15_682 at 698.917 kb on + strand, within HP15_682 at 699.125 kb on - strand, within HP15_682 at 699.125 kb on - strand, within HP15_682 at 699.242 kb on - strand, within HP15_682 at 699.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 696,736 - HP15_678 0.36 +2.1 696,784 + HP15_678 0.45 +2.2 696,789 + HP15_678 0.46 +3.6 696,789 + HP15_678 0.46 +4.5 696,789 + HP15_678 0.46 +3.1 696,797 - HP15_678 0.47 +1.4 696,914 + HP15_678 0.69 +4.4 696,935 + HP15_678 0.73 +3.8 696,994 + HP15_678 0.84 +3.7 697,021 - HP15_678 0.89 +2.9 697,022 + HP15_678 0.90 +3.9 697,084 + +3.5 697,092 - +2.2 697,167 - HP15_679 0.31 +0.6 697,245 + HP15_679 0.61 +1.5 697,253 - HP15_679 0.64 +1.0 697,351 - +2.1 697,391 + +2.8 697,670 + +2.8 697,747 - +1.1 697,793 - +0.9 697,808 - HP15_681 0.12 +1.1 697,844 - HP15_681 0.17 -1.0 697,919 + HP15_681 0.28 +0.4 697,934 - HP15_681 0.30 -0.1 697,955 - HP15_681 0.33 +0.2 697,969 - HP15_681 0.36 +0.3 698,119 - HP15_681 0.58 +0.7 698,153 + HP15_681 0.63 +1.8 698,153 + HP15_681 0.63 +0.9 698,158 + HP15_681 0.64 +1.2 698,165 + HP15_681 0.65 +1.0 698,185 + HP15_681 0.68 +1.1 698,193 - HP15_681 0.69 -0.5 698,213 + HP15_681 0.72 +0.4 698,213 + HP15_681 0.72 +0.6 698,234 + HP15_681 0.75 +1.2 698,242 - HP15_681 0.76 +1.1 698,329 - HP15_681 0.89 +0.8 698,342 + +1.9 698,358 + +1.7 698,398 + +0.5 698,405 + +0.9 698,406 - +1.1 698,497 + HP15_682 0.10 +0.7 698,523 - HP15_682 0.13 -0.0 698,573 + HP15_682 0.18 +0.6 698,612 + HP15_682 0.22 +0.8 698,620 + HP15_682 0.22 +1.1 698,675 + HP15_682 0.28 +0.2 698,690 - HP15_682 0.29 +0.3 698,774 + HP15_682 0.38 -0.6 698,803 + HP15_682 0.40 +0.9 698,808 + HP15_682 0.41 +0.7 698,816 - HP15_682 0.42 +0.2 698,816 - HP15_682 0.42 +0.4 698,848 - HP15_682 0.45 -1.0 698,848 - HP15_682 0.45 +1.2 698,891 - HP15_682 0.49 -0.0 698,915 - HP15_682 0.51 +0.1 698,915 - HP15_682 0.51 +2.3 698,917 + HP15_682 0.52 +0.0 699,125 - HP15_682 0.72 +0.1 699,125 - HP15_682 0.72 +0.9 699,242 - HP15_682 0.84 +0.1 699,352 - +0.8
Or see this region's nucleotide sequence