Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_484 and HP15_485 are separated by 216 nucleotides HP15_485 and HP15_486 are separated by 27 nucleotides HP15_486 and HP15_487 are separated by 252 nucleotides HP15_487 and HP15_488 overlap by 1 nucleotides
HP15_484: HP15_484 - uroporphyrinogen decarboxylase, at 499,879 to 500,943
_484
HP15_485: HP15_485 - hypothetical protein, at 501,160 to 501,264
_485
HP15_486: HP15_486 - type IV pilus assembly PilZ, at 501,292 to 501,564
_486
HP15_487: HP15_487 - DNA repair protein RadA, at 501,817 to 503,193
_487
HP15_488: HP15_488 - ABC transporter ATP-binding protein-like protein, at 503,193 to 504,854
_488
Position (kb) 501
502
503
504 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 500.961 kb on + strand at 500.969 kb on - strand at 501.058 kb on - strand at 501.087 kb on - strand at 501.115 kb on - strand at 501.185 kb on + strand, within HP15_485 at 501.279 kb on - strand at 501.292 kb on - strand at 501.350 kb on + strand, within HP15_486 at 501.350 kb on + strand, within HP15_486 at 501.358 kb on - strand, within HP15_486 at 501.529 kb on + strand, within HP15_486 at 501.539 kb on - strand at 501.652 kb on - strand at 501.659 kb on + strand at 501.664 kb on + strand at 501.672 kb on - strand at 501.708 kb on - strand at 501.814 kb on + strand at 501.913 kb on - strand at 502.029 kb on - strand, within HP15_487 at 502.087 kb on + strand, within HP15_487 at 502.197 kb on + strand, within HP15_487 at 502.209 kb on + strand, within HP15_487 at 502.366 kb on + strand, within HP15_487 at 502.374 kb on - strand, within HP15_487 at 502.442 kb on - strand, within HP15_487 at 502.474 kb on - strand, within HP15_487 at 502.476 kb on + strand, within HP15_487 at 502.506 kb on + strand, within HP15_487 at 502.659 kb on + strand, within HP15_487 at 502.667 kb on - strand, within HP15_487 at 503.005 kb on + strand, within HP15_487 at 503.102 kb on + strand at 503.109 kb on - strand at 503.273 kb on + strand at 503.328 kb on - strand at 503.351 kb on + strand at 503.351 kb on + strand at 503.673 kb on + strand, within HP15_488 at 503.673 kb on + strand, within HP15_488 at 503.691 kb on - strand, within HP15_488 at 503.691 kb on - strand, within HP15_488 at 503.760 kb on - strand, within HP15_488 at 503.760 kb on - strand, within HP15_488 at 503.954 kb on + strand, within HP15_488 at 503.995 kb on + strand, within HP15_488 at 504.014 kb on + strand, within HP15_488
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 500,961 + -0.4 500,969 - -0.8 501,058 - -0.4 501,087 - +0.2 501,115 - +0.4 501,185 + HP15_485 0.24 -0.2 501,279 - -0.4 501,292 - -0.1 501,350 + HP15_486 0.21 -0.2 501,350 + HP15_486 0.21 -1.1 501,358 - HP15_486 0.24 +0.0 501,529 + HP15_486 0.87 +0.9 501,539 - -0.1 501,652 - +0.4 501,659 + -1.0 501,664 + +0.7 501,672 - +0.2 501,708 - -1.4 501,814 + -1.1 501,913 - -3.5 502,029 - HP15_487 0.15 -1.4 502,087 + HP15_487 0.20 -2.9 502,197 + HP15_487 0.28 -3.2 502,209 + HP15_487 0.28 -3.8 502,366 + HP15_487 0.40 -2.8 502,374 - HP15_487 0.40 -4.5 502,442 - HP15_487 0.45 -4.2 502,474 - HP15_487 0.48 -4.5 502,476 + HP15_487 0.48 -2.4 502,506 + HP15_487 0.50 -2.0 502,659 + HP15_487 0.61 -3.6 502,667 - HP15_487 0.62 -1.4 503,005 + HP15_487 0.86 -4.5 503,102 + -4.7 503,109 - -6.9 503,273 + -3.3 503,328 - -0.9 503,351 + -3.9 503,351 + -2.0 503,673 + HP15_488 0.29 -5.2 503,673 + HP15_488 0.29 -3.6 503,691 - HP15_488 0.30 -1.4 503,691 - HP15_488 0.30 -2.2 503,760 - HP15_488 0.34 -1.4 503,760 - HP15_488 0.34 -1.0 503,954 + HP15_488 0.46 -1.4 503,995 + HP15_488 0.48 -1.4 504,014 + HP15_488 0.49 -2.4
Or see this region's nucleotide sequence