Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g43 and HP15_p42g44 are separated by 9 nucleotides HP15_p42g44 and HP15_p42g45 are separated by 18 nucleotides HP15_p42g45 and HP15_p42g46 are separated by 3 nucleotides HP15_p42g46 and HP15_p42g47 are separated by 2 nucleotides
HP15_p42g43: HP15_p42g43 - TrbK entry exclusion protein-like protein, at 33,397 to 33,624
_p42g43
HP15_p42g44: HP15_p42g44 - mating pair formation protein TrbJ, at 33,634 to 34,395
_p42g44
HP15_p42g45: HP15_p42g45 - conjugation TrbI family protein, at 34,414 to 35,841
_p42g45
HP15_p42g46: HP15_p42g46 - conjugal transfer, TrbH, at 35,845 to 36,360
_p42g46
HP15_p42g47: HP15_p42g47 - conjugal transfer protein TrbG/VirB9/CagX, at 36,363 to 37,268
_p42g47
Position (kb)
34
35
36 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 33.434 kb on + strand, within HP15_p42g43 at 33.493 kb on - strand, within HP15_p42g43 at 33.574 kb on - strand, within HP15_p42g43 at 33.579 kb on + strand, within HP15_p42g43 at 33.641 kb on - strand at 33.645 kb on + strand at 33.653 kb on - strand at 33.654 kb on - strand at 33.684 kb on - strand at 33.689 kb on - strand at 33.697 kb on + strand at 33.790 kb on + strand, within HP15_p42g44 at 34.009 kb on - strand, within HP15_p42g44 at 34.021 kb on + strand, within HP15_p42g44 at 34.045 kb on - strand, within HP15_p42g44 at 34.066 kb on - strand, within HP15_p42g44 at 34.068 kb on + strand, within HP15_p42g44 at 34.120 kb on - strand, within HP15_p42g44 at 34.172 kb on + strand, within HP15_p42g44 at 34.194 kb on - strand, within HP15_p42g44 at 34.290 kb on + strand, within HP15_p42g44 at 34.290 kb on + strand, within HP15_p42g44 at 34.290 kb on + strand, within HP15_p42g44 at 34.332 kb on + strand at 34.335 kb on - strand at 34.357 kb on + strand at 34.362 kb on + strand at 34.399 kb on + strand at 34.419 kb on + strand at 34.511 kb on + strand at 34.521 kb on - strand at 34.596 kb on + strand, within HP15_p42g45 at 34.635 kb on + strand, within HP15_p42g45 at 34.643 kb on - strand, within HP15_p42g45 at 34.658 kb on + strand, within HP15_p42g45 at 34.696 kb on - strand, within HP15_p42g45 at 34.697 kb on - strand, within HP15_p42g45 at 34.802 kb on - strand, within HP15_p42g45 at 34.911 kb on + strand, within HP15_p42g45 at 34.955 kb on + strand, within HP15_p42g45 at 34.998 kb on + strand, within HP15_p42g45 at 34.998 kb on + strand, within HP15_p42g45 at 35.008 kb on + strand, within HP15_p42g45 at 35.091 kb on + strand, within HP15_p42g45 at 35.218 kb on + strand, within HP15_p42g45 at 35.306 kb on - strand, within HP15_p42g45 at 35.306 kb on - strand, within HP15_p42g45 at 35.328 kb on + strand, within HP15_p42g45 at 35.336 kb on - strand, within HP15_p42g45 at 35.421 kb on + strand, within HP15_p42g45 at 35.486 kb on + strand, within HP15_p42g45 at 35.662 kb on + strand, within HP15_p42g45 at 35.682 kb on - strand, within HP15_p42g45 at 35.725 kb on + strand at 35.725 kb on + strand at 35.732 kb on - strand at 35.732 kb on - strand at 35.818 kb on - strand at 35.842 kb on + strand at 35.944 kb on + strand, within HP15_p42g46 at 35.946 kb on + strand, within HP15_p42g46 at 35.946 kb on + strand, within HP15_p42g46 at 35.948 kb on + strand, within HP15_p42g46 at 35.991 kb on + strand, within HP15_p42g46 at 36.011 kb on + strand, within HP15_p42g46 at 36.019 kb on - strand, within HP15_p42g46 at 36.019 kb on - strand, within HP15_p42g46 at 36.029 kb on - strand, within HP15_p42g46 at 36.040 kb on + strand, within HP15_p42g46 at 36.045 kb on + strand, within HP15_p42g46 at 36.050 kb on + strand, within HP15_p42g46 at 36.055 kb on + strand, within HP15_p42g46 at 36.058 kb on - strand, within HP15_p42g46 at 36.058 kb on - strand, within HP15_p42g46 at 36.109 kb on + strand, within HP15_p42g46 at 36.109 kb on + strand, within HP15_p42g46 at 36.115 kb on - strand, within HP15_p42g46 at 36.117 kb on - strand, within HP15_p42g46 at 36.145 kb on + strand, within HP15_p42g46 at 36.145 kb on + strand, within HP15_p42g46 at 36.153 kb on - strand, within HP15_p42g46 at 36.153 kb on - strand, within HP15_p42g46 at 36.153 kb on - strand, within HP15_p42g46 at 36.170 kb on + strand, within HP15_p42g46 at 36.170 kb on + strand, within HP15_p42g46 at 36.170 kb on + strand, within HP15_p42g46 at 36.170 kb on + strand, within HP15_p42g46 at 36.170 kb on + strand, within HP15_p42g46 at 36.258 kb on + strand, within HP15_p42g46 at 36.292 kb on + strand, within HP15_p42g46 at 36.317 kb on + strand at 36.325 kb on - strand at 36.359 kb on - strand at 36.360 kb on + strand at 36.432 kb on + strand at 36.490 kb on + strand, within HP15_p42g47 at 36.511 kb on + strand, within HP15_p42g47 at 36.553 kb on - strand, within HP15_p42g47 at 36.570 kb on - strand, within HP15_p42g47 at 36.614 kb on + strand, within HP15_p42g47 at 36.702 kb on + strand, within HP15_p42g47 at 36.710 kb on - strand, within HP15_p42g47 at 36.759 kb on + strand, within HP15_p42g47 at 36.824 kb on + strand, within HP15_p42g47
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 33,434 + HP15_p42g43 0.16 +0.3 33,493 - HP15_p42g43 0.42 -0.2 33,574 - HP15_p42g43 0.78 +0.5 33,579 + HP15_p42g43 0.80 +0.0 33,641 - -0.2 33,645 + +0.5 33,653 - -0.5 33,654 - -0.5 33,684 - +4.1 33,689 - -1.4 33,697 + -0.2 33,790 + HP15_p42g44 0.20 +0.1 34,009 - HP15_p42g44 0.49 -0.5 34,021 + HP15_p42g44 0.51 +0.1 34,045 - HP15_p42g44 0.54 +0.1 34,066 - HP15_p42g44 0.57 -0.5 34,068 + HP15_p42g44 0.57 +0.4 34,120 - HP15_p42g44 0.64 -0.5 34,172 + HP15_p42g44 0.71 -0.1 34,194 - HP15_p42g44 0.73 +0.1 34,290 + HP15_p42g44 0.86 +3.3 34,290 + HP15_p42g44 0.86 +0.0 34,290 + HP15_p42g44 0.86 +0.6 34,332 + +1.3 34,335 - -0.5 34,357 + +0.6 34,362 + -0.7 34,399 + +1.0 34,419 + +0.5 34,511 + -0.8 34,521 - -1.3 34,596 + HP15_p42g45 0.13 +1.8 34,635 + HP15_p42g45 0.15 +1.5 34,643 - HP15_p42g45 0.16 -1.9 34,658 + HP15_p42g45 0.17 +0.9 34,696 - HP15_p42g45 0.20 +0.8 34,697 - HP15_p42g45 0.20 +0.1 34,802 - HP15_p42g45 0.27 -0.2 34,911 + HP15_p42g45 0.35 +1.7 34,955 + HP15_p42g45 0.38 +1.6 34,998 + HP15_p42g45 0.41 +1.2 34,998 + HP15_p42g45 0.41 +0.6 35,008 + HP15_p42g45 0.42 +0.2 35,091 + HP15_p42g45 0.47 +1.9 35,218 + HP15_p42g45 0.56 -4.6 35,306 - HP15_p42g45 0.62 +0.5 35,306 - HP15_p42g45 0.62 +1.2 35,328 + HP15_p42g45 0.64 +1.4 35,336 - HP15_p42g45 0.65 +1.1 35,421 + HP15_p42g45 0.71 -1.0 35,486 + HP15_p42g45 0.75 +0.0 35,662 + HP15_p42g45 0.87 +0.5 35,682 - HP15_p42g45 0.89 -0.0 35,725 + +0.9 35,725 + +0.2 35,732 - +0.8 35,732 - -0.8 35,818 - +0.6 35,842 + -0.1 35,944 + HP15_p42g46 0.19 -0.5 35,946 + HP15_p42g46 0.20 -0.7 35,946 + HP15_p42g46 0.20 +0.4 35,948 + HP15_p42g46 0.20 +0.6 35,991 + HP15_p42g46 0.28 -0.0 36,011 + HP15_p42g46 0.32 -2.3 36,019 - HP15_p42g46 0.34 +5.5 36,019 - HP15_p42g46 0.34 -1.1 36,029 - HP15_p42g46 0.36 -0.9 36,040 + HP15_p42g46 0.38 -0.1 36,045 + HP15_p42g46 0.39 +0.9 36,050 + HP15_p42g46 0.40 -0.2 36,055 + HP15_p42g46 0.41 -0.2 36,058 - HP15_p42g46 0.41 -2.3 36,058 - HP15_p42g46 0.41 -1.0 36,109 + HP15_p42g46 0.51 +0.8 36,109 + HP15_p42g46 0.51 -0.5 36,115 - HP15_p42g46 0.52 -1.3 36,117 - HP15_p42g46 0.53 -1.3 36,145 + HP15_p42g46 0.58 +0.2 36,145 + HP15_p42g46 0.58 -0.2 36,153 - HP15_p42g46 0.60 -0.2 36,153 - HP15_p42g46 0.60 +0.6 36,153 - HP15_p42g46 0.60 +0.0 36,170 + HP15_p42g46 0.63 -0.6 36,170 + HP15_p42g46 0.63 -0.3 36,170 + HP15_p42g46 0.63 +0.3 36,170 + HP15_p42g46 0.63 +0.2 36,170 + HP15_p42g46 0.63 +0.5 36,258 + HP15_p42g46 0.80 -0.3 36,292 + HP15_p42g46 0.87 +1.3 36,317 + +1.6 36,325 - +0.1 36,359 - -0.2 36,360 + +0.6 36,432 + +1.0 36,490 + HP15_p42g47 0.14 +0.6 36,511 + HP15_p42g47 0.16 +0.3 36,553 - HP15_p42g47 0.21 -0.1 36,570 - HP15_p42g47 0.23 -1.1 36,614 + HP15_p42g47 0.28 -1.5 36,702 + HP15_p42g47 0.37 -0.4 36,710 - HP15_p42g47 0.38 +0.1 36,759 + HP15_p42g47 0.44 +0.5 36,824 + HP15_p42g47 0.51 +1.9
Or see this region's nucleotide sequence