Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g22

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p42g20 and HP15_p42g21 are separated by 348 nucleotidesHP15_p42g21 and HP15_p42g22 are separated by 52 nucleotidesHP15_p42g22 and HP15_p42g23 overlap by 4 nucleotides HP15_p42g20: HP15_p42g20 - TraK-like protein of DNA transfer, at 13,715 to 14,146 _p42g20 HP15_p42g21: HP15_p42g21 - oriT binding protein TraJ, at 14,495 to 14,866 _p42g21 HP15_p42g22: HP15_p42g22 - TraI DNA relaxase, at 14,919 to 17,186 _p42g22 HP15_p42g23: HP15_p42g23 - TRAG family protein, at 17,183 to 19,090 _p42g23 Position (kb) 14 15 16 17 18Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 14.067 kb on + strand, within HP15_p42g20at 14.483 kb on - strandat 14.514 kb on - strandat 14.638 kb on - strand, within HP15_p42g21at 14.669 kb on - strand, within HP15_p42g21at 14.671 kb on + strand, within HP15_p42g21at 14.678 kb on + strand, within HP15_p42g21at 14.764 kb on - strand, within HP15_p42g21at 14.963 kb on - strandat 14.986 kb on - strandat 14.997 kb on + strandat 14.997 kb on + strandat 15.000 kb on - strandat 15.074 kb on - strandat 15.091 kb on - strandat 15.168 kb on - strand, within HP15_p42g22at 15.191 kb on - strand, within HP15_p42g22at 15.209 kb on + strand, within HP15_p42g22at 15.217 kb on - strand, within HP15_p42g22at 15.217 kb on - strand, within HP15_p42g22at 15.222 kb on - strand, within HP15_p42g22at 15.224 kb on - strand, within HP15_p42g22at 15.375 kb on - strand, within HP15_p42g22at 15.486 kb on + strand, within HP15_p42g22at 15.491 kb on + strand, within HP15_p42g22at 15.493 kb on - strand, within HP15_p42g22at 15.596 kb on - strand, within HP15_p42g22at 15.601 kb on - strand, within HP15_p42g22at 15.601 kb on - strand, within HP15_p42g22at 15.612 kb on + strand, within HP15_p42g22at 15.615 kb on - strand, within HP15_p42g22at 15.615 kb on - strand, within HP15_p42g22at 15.692 kb on - strand, within HP15_p42g22at 15.724 kb on - strand, within HP15_p42g22at 15.800 kb on - strand, within HP15_p42g22at 15.805 kb on - strand, within HP15_p42g22at 15.851 kb on - strand, within HP15_p42g22at 15.971 kb on - strand, within HP15_p42g22at 16.067 kb on - strand, within HP15_p42g22at 16.075 kb on - strand, within HP15_p42g22at 16.280 kb on - strand, within HP15_p42g22at 16.346 kb on - strand, within HP15_p42g22at 16.727 kb on - strand, within HP15_p42g22at 16.762 kb on - strand, within HP15_p42g22at 16.762 kb on - strand, within HP15_p42g22at 16.815 kb on - strand, within HP15_p42g22at 16.909 kb on - strand, within HP15_p42g22at 16.922 kb on - strand, within HP15_p42g22at 17.033 kb on - strandat 17.075 kb on - strandat 17.219 kb on - strandat 17.248 kb on + strandat 17.319 kb on + strandat 17.337 kb on + strandat 17.373 kb on + strandat 17.381 kb on - strand, within HP15_p42g23at 17.381 kb on - strand, within HP15_p42g23at 17.386 kb on - strand, within HP15_p42g23at 17.386 kb on - strand, within HP15_p42g23at 17.493 kb on - strand, within HP15_p42g23at 17.507 kb on - strand, within HP15_p42g23at 17.508 kb on + strand, within HP15_p42g23at 17.508 kb on + strand, within HP15_p42g23at 17.508 kb on + strand, within HP15_p42g23at 17.508 kb on + strand, within HP15_p42g23at 17.516 kb on - strand, within HP15_p42g23at 17.516 kb on - strand, within HP15_p42g23at 17.516 kb on - strand, within HP15_p42g23at 17.516 kb on - strand, within HP15_p42g23at 17.528 kb on - strand, within HP15_p42g23at 17.543 kb on - strand, within HP15_p42g23at 17.711 kb on - strand, within HP15_p42g23at 17.726 kb on + strand, within HP15_p42g23at 17.734 kb on - strand, within HP15_p42g23at 17.734 kb on - strand, within HP15_p42g23at 17.756 kb on - strand, within HP15_p42g23at 17.783 kb on + strand, within HP15_p42g23at 17.783 kb on + strand, within HP15_p42g23at 17.791 kb on - strand, within HP15_p42g23at 17.818 kb on + strand, within HP15_p42g23at 17.898 kb on - strand, within HP15_p42g23at 17.960 kb on + strand, within HP15_p42g23at 17.968 kb on - strand, within HP15_p42g23at 17.968 kb on - strand, within HP15_p42g23at 17.991 kb on - strand, within HP15_p42g23at 18.011 kb on - strand, within HP15_p42g23at 18.065 kb on + strand, within HP15_p42g23at 18.177 kb on + strand, within HP15_p42g23

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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14,067 + HP15_p42g20 0.81 -0.8
14,483 - -0.3
14,514 - +0.0
14,638 - HP15_p42g21 0.38 -0.3
14,669 - HP15_p42g21 0.47 -0.8
14,671 + HP15_p42g21 0.47 -1.8
14,678 + HP15_p42g21 0.49 -0.4
14,764 - HP15_p42g21 0.72 +1.1
14,963 - -0.7
14,986 - -0.7
14,997 + -3.3
14,997 + -2.0
15,000 - -0.2
15,074 - -3.0
15,091 - +0.8
15,168 - HP15_p42g22 0.11 +0.5
15,191 - HP15_p42g22 0.12 -0.9
15,209 + HP15_p42g22 0.13 -2.6
15,217 - HP15_p42g22 0.13 -1.5
15,217 - HP15_p42g22 0.13 -1.5
15,222 - HP15_p42g22 0.13 -0.9
15,224 - HP15_p42g22 0.13 -0.7
15,375 - HP15_p42g22 0.20 -0.9
15,486 + HP15_p42g22 0.25 -2.3
15,491 + HP15_p42g22 0.25 -1.3
15,493 - HP15_p42g22 0.25 -0.1
15,596 - HP15_p42g22 0.30 +0.1
15,601 - HP15_p42g22 0.30 -1.3
15,601 - HP15_p42g22 0.30 -1.0
15,612 + HP15_p42g22 0.31 -1.0
15,615 - HP15_p42g22 0.31 -0.0
15,615 - HP15_p42g22 0.31 -1.5
15,692 - HP15_p42g22 0.34 -0.7
15,724 - HP15_p42g22 0.35 +0.2
15,800 - HP15_p42g22 0.39 -1.3
15,805 - HP15_p42g22 0.39 -1.3
15,851 - HP15_p42g22 0.41 +0.2
15,971 - HP15_p42g22 0.46 -1.4
16,067 - HP15_p42g22 0.51 -0.4
16,075 - HP15_p42g22 0.51 +0.4
16,280 - HP15_p42g22 0.60 -0.3
16,346 - HP15_p42g22 0.63 +3.3
16,727 - HP15_p42g22 0.80 +0.3
16,762 - HP15_p42g22 0.81 -1.8
16,762 - HP15_p42g22 0.81 +0.1
16,815 - HP15_p42g22 0.84 -1.7
16,909 - HP15_p42g22 0.88 -1.2
16,922 - HP15_p42g22 0.88 +0.5
17,033 - -1.3
17,075 - -1.1
17,219 - -0.6
17,248 + -1.7
17,319 + +0.0
17,337 + -2.3
17,373 + -0.3
17,381 - HP15_p42g23 0.10 -0.0
17,381 - HP15_p42g23 0.10 -0.9
17,386 - HP15_p42g23 0.11 +0.1
17,386 - HP15_p42g23 0.11 -0.9
17,493 - HP15_p42g23 0.16 -0.1
17,507 - HP15_p42g23 0.17 +1.1
17,508 + HP15_p42g23 0.17 -0.7
17,508 + HP15_p42g23 0.17 -0.2
17,508 + HP15_p42g23 0.17 -0.2
17,508 + HP15_p42g23 0.17 +0.2
17,516 - HP15_p42g23 0.17 -0.2
17,516 - HP15_p42g23 0.17 -1.0
17,516 - HP15_p42g23 0.17 -0.3
17,516 - HP15_p42g23 0.17 +1.5
17,528 - HP15_p42g23 0.18 +2.7
17,543 - HP15_p42g23 0.19 -0.6
17,711 - HP15_p42g23 0.28 +1.4
17,726 + HP15_p42g23 0.28 +0.3
17,734 - HP15_p42g23 0.29 -2.5
17,734 - HP15_p42g23 0.29 -0.3
17,756 - HP15_p42g23 0.30 -0.5
17,783 + HP15_p42g23 0.31 -4.3
17,783 + HP15_p42g23 0.31 -0.5
17,791 - HP15_p42g23 0.32 -0.8
17,818 + HP15_p42g23 0.33 -0.2
17,898 - HP15_p42g23 0.37 -0.1
17,960 + HP15_p42g23 0.41 +0.1
17,968 - HP15_p42g23 0.41 -0.9
17,968 - HP15_p42g23 0.41 -0.3
17,991 - HP15_p42g23 0.42 -0.0
18,011 - HP15_p42g23 0.43 +0.4
18,065 + HP15_p42g23 0.46 -0.8
18,177 + HP15_p42g23 0.52 -0.9

Or see this region's nucleotide sequence