Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4169 and HP15_4170 are separated by 13 nucleotides HP15_4170 and HP15_4171 are separated by 85 nucleotides HP15_4171 and HP15_4172 are separated by 57 nucleotides HP15_4172 and HP15_4173 are separated by 2 nucleotides
HP15_4169: HP15_4169 - diguanylate cyclase (GGDEF domain), at 4,405,832 to 4,406,788
_4169
HP15_4170: HP15_4170 - protein containing chemotaxis methyl-accepting receptor, signaling domain, at 4,406,802 to 4,407,071
_4170
HP15_4171: HP15_4171 - transcriptional regulator of molybdate metabolism, LysR family, at 4,407,157 to 4,408,338
_4171
HP15_4172: HP15_4172 - ATP synthase subunit E, at 4,408,396 to 4,408,872
_4172
HP15_4173: HP15_4173 - NADH dehydrogenase (quinone), at 4,408,875 to 4,410,413
_4173
Position (kb)
4407
4408
4409 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 4406.191 kb on + strand, within HP15_4169 at 4406.210 kb on + strand, within HP15_4169 at 4406.218 kb on - strand, within HP15_4169 at 4406.248 kb on + strand, within HP15_4169 at 4406.256 kb on - strand, within HP15_4169 at 4406.256 kb on - strand, within HP15_4169 at 4406.404 kb on + strand, within HP15_4169 at 4406.422 kb on - strand, within HP15_4169 at 4406.432 kb on - strand, within HP15_4169 at 4406.451 kb on + strand, within HP15_4169 at 4406.452 kb on - strand, within HP15_4169 at 4406.461 kb on - strand, within HP15_4169 at 4406.480 kb on + strand, within HP15_4169 at 4406.480 kb on + strand, within HP15_4169 at 4406.492 kb on + strand, within HP15_4169 at 4406.499 kb on + strand, within HP15_4169 at 4406.499 kb on + strand, within HP15_4169 at 4406.592 kb on + strand, within HP15_4169 at 4406.600 kb on - strand, within HP15_4169 at 4406.608 kb on + strand, within HP15_4169 at 4406.613 kb on + strand, within HP15_4169 at 4406.615 kb on + strand, within HP15_4169 at 4406.616 kb on - strand, within HP15_4169 at 4406.654 kb on - strand, within HP15_4169 at 4406.761 kb on - strand at 4406.845 kb on + strand, within HP15_4170 at 4406.853 kb on - strand, within HP15_4170 at 4406.972 kb on - strand, within HP15_4170 at 4407.032 kb on + strand, within HP15_4170 at 4407.040 kb on - strand, within HP15_4170 at 4407.131 kb on - strand at 4407.165 kb on + strand at 4407.190 kb on - strand at 4407.200 kb on + strand at 4407.210 kb on + strand at 4407.253 kb on - strand at 4407.291 kb on + strand, within HP15_4171 at 4407.299 kb on - strand, within HP15_4171 at 4407.299 kb on - strand, within HP15_4171 at 4407.449 kb on - strand, within HP15_4171 at 4407.508 kb on - strand, within HP15_4171 at 4407.509 kb on - strand, within HP15_4171 at 4407.525 kb on + strand, within HP15_4171 at 4407.543 kb on - strand, within HP15_4171 at 4407.584 kb on + strand, within HP15_4171 at 4407.595 kb on + strand, within HP15_4171 at 4407.603 kb on + strand, within HP15_4171 at 4407.611 kb on - strand, within HP15_4171 at 4407.612 kb on + strand, within HP15_4171 at 4407.620 kb on - strand, within HP15_4171 at 4407.701 kb on + strand, within HP15_4171 at 4407.806 kb on + strand, within HP15_4171 at 4407.874 kb on - strand, within HP15_4171 at 4407.879 kb on - strand, within HP15_4171 at 4407.973 kb on - strand, within HP15_4171 at 4408.043 kb on - strand, within HP15_4171 at 4408.055 kb on + strand, within HP15_4171 at 4408.074 kb on - strand, within HP15_4171 at 4408.074 kb on - strand, within HP15_4171 at 4408.104 kb on - strand, within HP15_4171 at 4408.204 kb on + strand, within HP15_4171 at 4408.293 kb on - strand at 4408.425 kb on + strand at 4408.425 kb on - strand at 4408.460 kb on - strand, within HP15_4172 at 4408.460 kb on - strand, within HP15_4172 at 4408.467 kb on + strand, within HP15_4172 at 4408.491 kb on - strand, within HP15_4172 at 4408.501 kb on - strand, within HP15_4172 at 4408.540 kb on - strand, within HP15_4172 at 4408.632 kb on - strand, within HP15_4172 at 4408.656 kb on - strand, within HP15_4172 at 4408.656 kb on - strand, within HP15_4172 at 4408.683 kb on - strand, within HP15_4172 at 4408.689 kb on + strand, within HP15_4172 at 4408.723 kb on - strand, within HP15_4172 at 4408.756 kb on + strand, within HP15_4172 at 4408.756 kb on + strand, within HP15_4172 at 4408.756 kb on + strand, within HP15_4172 at 4408.764 kb on - strand, within HP15_4172 at 4408.766 kb on + strand, within HP15_4172 at 4408.790 kb on + strand, within HP15_4172 at 4408.815 kb on + strand, within HP15_4172 at 4408.843 kb on - strand at 4408.950 kb on - strand at 4408.966 kb on + strand at 4409.012 kb on + strand at 4409.012 kb on + strand at 4409.020 kb on - strand at 4409.125 kb on + strand, within HP15_4173 at 4409.186 kb on - strand, within HP15_4173 at 4409.196 kb on - strand, within HP15_4173 at 4409.263 kb on + strand, within HP15_4173 at 4409.263 kb on + strand, within HP15_4173 at 4409.271 kb on - strand, within HP15_4173 at 4409.271 kb on - strand, within HP15_4173 at 4409.282 kb on + strand, within HP15_4173 at 4409.294 kb on + strand, within HP15_4173 at 4409.309 kb on + strand, within HP15_4173 at 4409.317 kb on + strand, within HP15_4173 at 4409.317 kb on + strand, within HP15_4173 at 4409.317 kb on + strand, within HP15_4173 at 4409.317 kb on - strand, within HP15_4173
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 4,406,191 + HP15_4169 0.38 +0.0 4,406,210 + HP15_4169 0.39 -0.4 4,406,218 - HP15_4169 0.40 -0.3 4,406,248 + HP15_4169 0.43 -0.7 4,406,256 - HP15_4169 0.44 +0.8 4,406,256 - HP15_4169 0.44 +0.2 4,406,404 + HP15_4169 0.60 -0.1 4,406,422 - HP15_4169 0.62 +0.1 4,406,432 - HP15_4169 0.63 -1.4 4,406,451 + HP15_4169 0.65 +1.4 4,406,452 - HP15_4169 0.65 +0.4 4,406,461 - HP15_4169 0.66 +1.0 4,406,480 + HP15_4169 0.68 +1.2 4,406,480 + HP15_4169 0.68 +1.3 4,406,492 + HP15_4169 0.69 -0.6 4,406,499 + HP15_4169 0.70 -0.9 4,406,499 + HP15_4169 0.70 +0.3 4,406,592 + HP15_4169 0.79 +0.2 4,406,600 - HP15_4169 0.80 +0.3 4,406,608 + HP15_4169 0.81 -0.0 4,406,613 + HP15_4169 0.82 +0.2 4,406,615 + HP15_4169 0.82 -2.0 4,406,616 - HP15_4169 0.82 -0.2 4,406,654 - HP15_4169 0.86 +0.4 4,406,761 - +1.0 4,406,845 + HP15_4170 0.16 -0.5 4,406,853 - HP15_4170 0.19 +0.1 4,406,972 - HP15_4170 0.63 +3.3 4,407,032 + HP15_4170 0.85 -1.8 4,407,040 - HP15_4170 0.88 +0.7 4,407,131 - +1.3 4,407,165 + -0.8 4,407,190 - +1.1 4,407,200 + +0.9 4,407,210 + +0.2 4,407,253 - -0.8 4,407,291 + HP15_4171 0.11 -1.3 4,407,299 - HP15_4171 0.12 +0.2 4,407,299 - HP15_4171 0.12 +0.2 4,407,449 - HP15_4171 0.25 -1.2 4,407,508 - HP15_4171 0.30 -0.2 4,407,509 - HP15_4171 0.30 +0.1 4,407,525 + HP15_4171 0.31 -0.7 4,407,543 - HP15_4171 0.33 +0.4 4,407,584 + HP15_4171 0.36 -0.7 4,407,595 + HP15_4171 0.37 +1.4 4,407,603 + HP15_4171 0.38 +0.2 4,407,611 - HP15_4171 0.38 -1.8 4,407,612 + HP15_4171 0.38 -0.4 4,407,620 - HP15_4171 0.39 -0.4 4,407,701 + HP15_4171 0.46 -1.2 4,407,806 + HP15_4171 0.55 -0.4 4,407,874 - HP15_4171 0.61 -0.7 4,407,879 - HP15_4171 0.61 -0.0 4,407,973 - HP15_4171 0.69 -0.3 4,408,043 - HP15_4171 0.75 +0.6 4,408,055 + HP15_4171 0.76 -1.1 4,408,074 - HP15_4171 0.78 +0.4 4,408,074 - HP15_4171 0.78 +0.3 4,408,104 - HP15_4171 0.80 -0.9 4,408,204 + HP15_4171 0.89 -0.4 4,408,293 - +0.2 4,408,425 + +1.7 4,408,425 - +0.6 4,408,460 - HP15_4172 0.13 -1.0 4,408,460 - HP15_4172 0.13 -0.4 4,408,467 + HP15_4172 0.15 -1.0 4,408,491 - HP15_4172 0.20 +0.6 4,408,501 - HP15_4172 0.22 -0.2 4,408,540 - HP15_4172 0.30 -0.2 4,408,632 - HP15_4172 0.49 +0.0 4,408,656 - HP15_4172 0.55 +0.6 4,408,656 - HP15_4172 0.55 +0.8 4,408,683 - HP15_4172 0.60 -0.3 4,408,689 + HP15_4172 0.61 -1.5 4,408,723 - HP15_4172 0.69 -0.5 4,408,756 + HP15_4172 0.75 -0.1 4,408,756 + HP15_4172 0.75 +0.0 4,408,756 + HP15_4172 0.75 +5.3 4,408,764 - HP15_4172 0.77 -0.1 4,408,766 + HP15_4172 0.78 -1.3 4,408,790 + HP15_4172 0.83 -0.8 4,408,815 + HP15_4172 0.88 +0.1 4,408,843 - -0.4 4,408,950 - +0.8 4,408,966 + +0.3 4,409,012 + -0.0 4,409,012 + -0.2 4,409,020 - -2.5 4,409,125 + HP15_4173 0.16 -0.1 4,409,186 - HP15_4173 0.20 -1.2 4,409,196 - HP15_4173 0.21 -0.2 4,409,263 + HP15_4173 0.25 -0.0 4,409,263 + HP15_4173 0.25 +0.1 4,409,271 - HP15_4173 0.26 -0.1 4,409,271 - HP15_4173 0.26 -0.3 4,409,282 + HP15_4173 0.26 +0.2 4,409,294 + HP15_4173 0.27 -0.3 4,409,309 + HP15_4173 0.28 -1.0 4,409,317 + HP15_4173 0.29 -0.0 4,409,317 + HP15_4173 0.29 -0.4 4,409,317 + HP15_4173 0.29 +4.0 4,409,317 - HP15_4173 0.29 +0.4
Or see this region's nucleotide sequence