Strain Fitness in Marinobacter adhaerens HP15 around HP15_4147

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4146 and HP15_4147 are separated by 35 nucleotidesHP15_4147 and HP15_4148 overlap by 4 nucleotides HP15_4146: HP15_4146 - metallo-beta-lactamase superfamily protein, at 4,380,196 to 4,381,824 _4146 HP15_4147: HP15_4147 - hypothetical protein, at 4,381,860 to 4,382,147 _4147 HP15_4148: HP15_4148 - glucose-methanol-choline oxidoreductase, at 4,382,144 to 4,383,772 _4148 Position (kb) 4381 4382 4383Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4380.898 kb on + strand, within HP15_4146at 4380.918 kb on - strand, within HP15_4146at 4380.918 kb on - strand, within HP15_4146at 4380.918 kb on - strand, within HP15_4146at 4380.918 kb on - strand, within HP15_4146at 4381.063 kb on + strand, within HP15_4146at 4381.063 kb on - strand, within HP15_4146at 4381.104 kb on + strand, within HP15_4146at 4381.104 kb on + strand, within HP15_4146at 4381.104 kb on + strand, within HP15_4146at 4381.112 kb on - strand, within HP15_4146at 4381.112 kb on - strand, within HP15_4146at 4381.261 kb on - strand, within HP15_4146at 4381.269 kb on - strand, within HP15_4146at 4381.278 kb on - strand, within HP15_4146at 4381.308 kb on + strand, within HP15_4146at 4381.424 kb on + strand, within HP15_4146at 4381.424 kb on + strand, within HP15_4146at 4381.424 kb on + strand, within HP15_4146at 4381.432 kb on - strand, within HP15_4146at 4381.432 kb on - strand, within HP15_4146at 4381.449 kb on + strand, within HP15_4146at 4381.470 kb on + strand, within HP15_4146at 4381.478 kb on - strand, within HP15_4146at 4381.529 kb on + strand, within HP15_4146at 4381.592 kb on + strand, within HP15_4146at 4381.658 kb on + strand, within HP15_4146at 4381.660 kb on + strand, within HP15_4146at 4381.666 kb on - strandat 4381.765 kb on - strandat 4381.954 kb on - strand, within HP15_4147at 4381.984 kb on - strand, within HP15_4147at 4381.986 kb on + strand, within HP15_4147at 4381.994 kb on - strand, within HP15_4147at 4381.994 kb on - strand, within HP15_4147at 4382.039 kb on - strand, within HP15_4147at 4382.044 kb on - strand, within HP15_4147at 4382.100 kb on - strand, within HP15_4147at 4382.193 kb on + strandat 4382.251 kb on - strandat 4382.378 kb on + strand, within HP15_4148at 4382.393 kb on - strand, within HP15_4148at 4382.400 kb on + strand, within HP15_4148at 4382.424 kb on + strand, within HP15_4148at 4382.426 kb on + strand, within HP15_4148at 4382.487 kb on - strand, within HP15_4148at 4382.494 kb on + strand, within HP15_4148at 4382.544 kb on - strand, within HP15_4148at 4382.544 kb on - strand, within HP15_4148at 4382.628 kb on - strand, within HP15_4148at 4382.632 kb on + strand, within HP15_4148at 4382.766 kb on - strand, within HP15_4148at 4382.833 kb on + strand, within HP15_4148at 4382.855 kb on - strand, within HP15_4148at 4382.987 kb on - strand, within HP15_4148at 4383.045 kb on + strand, within HP15_4148at 4383.053 kb on - strand, within HP15_4148at 4383.063 kb on - strand, within HP15_4148at 4383.086 kb on + strand, within HP15_4148at 4383.125 kb on + strand, within HP15_4148

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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4,380,898 + HP15_4146 0.43 -0.6
4,380,918 - HP15_4146 0.44 -0.8
4,380,918 - HP15_4146 0.44 +1.2
4,380,918 - HP15_4146 0.44 -0.1
4,380,918 - HP15_4146 0.44 -1.2
4,381,063 + HP15_4146 0.53 -1.8
4,381,063 - HP15_4146 0.53 -1.6
4,381,104 + HP15_4146 0.56 +1.4
4,381,104 + HP15_4146 0.56 -0.9
4,381,104 + HP15_4146 0.56 -0.4
4,381,112 - HP15_4146 0.56 -1.0
4,381,112 - HP15_4146 0.56 -0.0
4,381,261 - HP15_4146 0.65 -0.7
4,381,269 - HP15_4146 0.66 -0.7
4,381,278 - HP15_4146 0.66 +2.3
4,381,308 + HP15_4146 0.68 +0.0
4,381,424 + HP15_4146 0.75 -0.3
4,381,424 + HP15_4146 0.75 -0.5
4,381,424 + HP15_4146 0.75 +0.8
4,381,432 - HP15_4146 0.76 -0.8
4,381,432 - HP15_4146 0.76 +0.4
4,381,449 + HP15_4146 0.77 -0.4
4,381,470 + HP15_4146 0.78 +0.8
4,381,478 - HP15_4146 0.79 +0.8
4,381,529 + HP15_4146 0.82 -1.3
4,381,592 + HP15_4146 0.86 -0.2
4,381,658 + HP15_4146 0.90 +0.1
4,381,660 + HP15_4146 0.90 -1.3
4,381,666 - +0.2
4,381,765 - +0.6
4,381,954 - HP15_4147 0.33 -0.7
4,381,984 - HP15_4147 0.43 +0.7
4,381,986 + HP15_4147 0.44 -0.2
4,381,994 - HP15_4147 0.47 -0.3
4,381,994 - HP15_4147 0.47 +0.1
4,382,039 - HP15_4147 0.62 +0.2
4,382,044 - HP15_4147 0.64 +3.6
4,382,100 - HP15_4147 0.83 +0.6
4,382,193 + -0.2
4,382,251 - +0.2
4,382,378 + HP15_4148 0.14 -1.2
4,382,393 - HP15_4148 0.15 -0.7
4,382,400 + HP15_4148 0.16 -0.2
4,382,424 + HP15_4148 0.17 -0.4
4,382,426 + HP15_4148 0.17 -2.0
4,382,487 - HP15_4148 0.21 +1.1
4,382,494 + HP15_4148 0.21 -1.2
4,382,544 - HP15_4148 0.25 +3.0
4,382,544 - HP15_4148 0.25 -0.0
4,382,628 - HP15_4148 0.30 -0.6
4,382,632 + HP15_4148 0.30 +1.2
4,382,766 - HP15_4148 0.38 -0.0
4,382,833 + HP15_4148 0.42 +1.6
4,382,855 - HP15_4148 0.44 -1.6
4,382,987 - HP15_4148 0.52 +0.5
4,383,045 + HP15_4148 0.55 +0.4
4,383,053 - HP15_4148 0.56 +0.7
4,383,063 - HP15_4148 0.56 -0.2
4,383,086 + HP15_4148 0.58 -1.1
4,383,125 + HP15_4148 0.60 -0.4

Or see this region's nucleotide sequence