Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_404 and HP15_405 are separated by 90 nucleotides HP15_405 and HP15_406 are separated by 202 nucleotides HP15_406 and HP15_407 are separated by 185 nucleotides
HP15_404: HP15_404 - DNA-directed RNA polymerase subunit alpha, at 398,309 to 399,268
_404
HP15_405: HP15_405 - ribosomal protein L17, at 399,359 to 399,700
_405
HP15_406: HP15_406 - excinuclease ABC, ATPase subunit (A), at 399,903 to 402,743
_406
HP15_407: HP15_407 - transporter, major facilitator family, at 402,929 to 404,299
_407
Position (kb) 399
400
401
402
403 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 400.060 kb on + strand at 400.060 kb on + strand at 400.158 kb on - strand at 400.360 kb on + strand, within HP15_406 at 400.418 kb on + strand, within HP15_406 at 400.426 kb on - strand, within HP15_406 at 400.533 kb on - strand, within HP15_406 at 400.635 kb on + strand, within HP15_406 at 400.639 kb on - strand, within HP15_406 at 400.661 kb on + strand, within HP15_406 at 400.661 kb on + strand, within HP15_406 at 400.669 kb on - strand, within HP15_406 at 400.677 kb on + strand, within HP15_406 at 400.682 kb on + strand, within HP15_406 at 400.682 kb on + strand, within HP15_406 at 400.690 kb on - strand, within HP15_406 at 400.704 kb on - strand, within HP15_406 at 400.708 kb on - strand, within HP15_406 at 400.905 kb on - strand, within HP15_406 at 400.905 kb on - strand, within HP15_406 at 400.999 kb on - strand, within HP15_406 at 401.012 kb on + strand, within HP15_406 at 401.089 kb on - strand, within HP15_406 at 401.102 kb on - strand, within HP15_406 at 401.128 kb on - strand, within HP15_406 at 401.232 kb on - strand, within HP15_406 at 401.268 kb on - strand, within HP15_406 at 401.278 kb on + strand, within HP15_406 at 401.348 kb on - strand, within HP15_406 at 401.507 kb on + strand, within HP15_406 at 401.507 kb on + strand, within HP15_406 at 401.515 kb on - strand, within HP15_406 at 401.515 kb on - strand, within HP15_406 at 401.515 kb on - strand, within HP15_406 at 401.515 kb on - strand, within HP15_406 at 401.600 kb on + strand, within HP15_406 at 401.600 kb on + strand, within HP15_406 at 401.608 kb on - strand, within HP15_406 at 401.638 kb on - strand, within HP15_406 at 401.828 kb on - strand, within HP15_406 at 401.896 kb on - strand, within HP15_406 at 401.969 kb on + strand, within HP15_406 at 402.022 kb on - strand, within HP15_406 at 402.047 kb on + strand, within HP15_406 at 402.066 kb on + strand, within HP15_406 at 402.101 kb on + strand, within HP15_406 at 402.126 kb on - strand, within HP15_406 at 402.126 kb on - strand, within HP15_406 at 402.144 kb on + strand, within HP15_406 at 402.152 kb on - strand, within HP15_406 at 402.152 kb on - strand, within HP15_406 at 402.152 kb on - strand, within HP15_406 at 402.227 kb on - strand, within HP15_406 at 402.380 kb on - strand, within HP15_406 at 402.473 kb on - strand at 402.648 kb on - strand at 402.702 kb on - strand at 402.712 kb on - strand at 402.882 kb on - strand at 402.916 kb on - strand at 402.953 kb on + strand at 402.987 kb on + strand at 402.995 kb on - strand at 402.995 kb on - strand at 403.005 kb on - strand at 403.034 kb on + strand at 403.042 kb on - strand at 403.042 kb on - strand at 403.043 kb on + strand at 403.077 kb on - strand, within HP15_407 at 403.080 kb on + strand, within HP15_407 at 403.092 kb on + strand, within HP15_407 at 403.210 kb on - strand, within HP15_407 at 403.241 kb on + strand, within HP15_407 at 403.289 kb on + strand, within HP15_407 at 403.297 kb on - strand, within HP15_407 at 403.297 kb on - strand, within HP15_407 at 403.307 kb on + strand, within HP15_407 at 403.312 kb on + strand, within HP15_407 at 403.395 kb on + strand, within HP15_407 at 403.425 kb on + strand, within HP15_407 at 403.523 kb on + strand, within HP15_407 at 403.533 kb on - strand, within HP15_407 at 403.595 kb on - strand, within HP15_407 at 403.743 kb on + strand, within HP15_407
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 400,060 + -5.0 400,060 + -5.5 400,158 - -2.8 400,360 + HP15_406 0.16 -3.3 400,418 + HP15_406 0.18 -3.9 400,426 - HP15_406 0.18 -0.9 400,533 - HP15_406 0.22 -4.3 400,635 + HP15_406 0.26 -4.7 400,639 - HP15_406 0.26 +0.7 400,661 + HP15_406 0.27 -3.9 400,661 + HP15_406 0.27 -1.9 400,669 - HP15_406 0.27 -4.4 400,677 + HP15_406 0.27 -4.6 400,682 + HP15_406 0.27 -2.9 400,682 + HP15_406 0.27 -2.6 400,690 - HP15_406 0.28 -4.5 400,704 - HP15_406 0.28 -3.6 400,708 - HP15_406 0.28 -3.5 400,905 - HP15_406 0.35 -2.6 400,905 - HP15_406 0.35 -3.0 400,999 - HP15_406 0.39 -4.3 401,012 + HP15_406 0.39 -5.9 401,089 - HP15_406 0.42 -1.8 401,102 - HP15_406 0.42 -3.5 401,128 - HP15_406 0.43 -0.9 401,232 - HP15_406 0.47 -3.7 401,268 - HP15_406 0.48 -6.1 401,278 + HP15_406 0.48 -2.7 401,348 - HP15_406 0.51 -1.9 401,507 + HP15_406 0.56 -3.9 401,507 + HP15_406 0.56 -3.0 401,515 - HP15_406 0.57 -3.1 401,515 - HP15_406 0.57 -1.9 401,515 - HP15_406 0.57 -4.5 401,515 - HP15_406 0.57 -5.8 401,600 + HP15_406 0.60 -2.1 401,600 + HP15_406 0.60 -3.9 401,608 - HP15_406 0.60 -4.5 401,638 - HP15_406 0.61 -3.6 401,828 - HP15_406 0.68 -2.6 401,896 - HP15_406 0.70 -4.1 401,969 + HP15_406 0.73 -1.9 402,022 - HP15_406 0.75 -3.1 402,047 + HP15_406 0.75 -4.7 402,066 + HP15_406 0.76 -2.3 402,101 + HP15_406 0.77 -3.2 402,126 - HP15_406 0.78 -4.4 402,126 - HP15_406 0.78 -4.3 402,144 + HP15_406 0.79 -3.8 402,152 - HP15_406 0.79 -3.5 402,152 - HP15_406 0.79 -4.3 402,152 - HP15_406 0.79 -5.3 402,227 - HP15_406 0.82 -4.4 402,380 - HP15_406 0.87 -4.1 402,473 - -2.1 402,648 - -3.3 402,702 - -1.3 402,712 - -2.9 402,882 - +1.6 402,916 - +1.3 402,953 + +0.8 402,987 + -0.8 402,995 - +0.2 402,995 - -0.1 403,005 - +0.2 403,034 + -1.8 403,042 - +1.4 403,042 - +1.2 403,043 + -0.3 403,077 - HP15_407 0.11 +1.0 403,080 + HP15_407 0.11 -1.9 403,092 + HP15_407 0.12 -0.5 403,210 - HP15_407 0.20 +1.0 403,241 + HP15_407 0.23 -0.5 403,289 + HP15_407 0.26 -1.9 403,297 - HP15_407 0.27 -0.3 403,297 - HP15_407 0.27 -0.1 403,307 + HP15_407 0.28 -0.9 403,312 + HP15_407 0.28 -1.3 403,395 + HP15_407 0.34 +0.4 403,425 + HP15_407 0.36 -1.3 403,523 + HP15_407 0.43 -1.9 403,533 - HP15_407 0.44 -0.1 403,595 - HP15_407 0.49 -0.7 403,743 + HP15_407 0.59 -1.5
Or see this region's nucleotide sequence