Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3898 and HP15_3899 are separated by 148 nucleotides HP15_3899 and HP15_3900 overlap by 4 nucleotides HP15_3900 and HP15_3901 are separated by 7 nucleotides
HP15_3898: HP15_3898 - conserved hypothetical protein, secreted, at 4,128,206 to 4,129,690
_3898
HP15_3899: HP15_3899 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 4,129,839 to 4,130,402
_3899
HP15_3900: HP15_3900 - conserved hypothetical protein, at 4,130,399 to 4,131,100
_3900
HP15_3901: HP15_3901 - signal transduction protein, at 4,131,108 to 4,132,529
_3901
Position (kb) 4129
4130
4131 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4128.842 kb on + strand, within HP15_3898 at 4128.860 kb on - strand, within HP15_3898 at 4128.911 kb on + strand, within HP15_3898 at 4128.924 kb on - strand, within HP15_3898 at 4128.975 kb on + strand, within HP15_3898 at 4128.981 kb on + strand, within HP15_3898 at 4128.987 kb on + strand, within HP15_3898 at 4128.987 kb on + strand, within HP15_3898 at 4129.096 kb on + strand, within HP15_3898 at 4129.240 kb on + strand, within HP15_3898 at 4129.250 kb on - strand, within HP15_3898 at 4129.256 kb on + strand, within HP15_3898 at 4129.264 kb on + strand, within HP15_3898 at 4129.345 kb on + strand, within HP15_3898 at 4129.546 kb on - strand at 4129.594 kb on - strand at 4129.640 kb on + strand at 4129.661 kb on - strand at 4129.750 kb on - strand at 4129.841 kb on + strand at 4129.926 kb on - strand, within HP15_3899 at 4129.954 kb on + strand, within HP15_3899 at 4129.962 kb on - strand, within HP15_3899 at 4130.070 kb on + strand, within HP15_3899 at 4130.075 kb on + strand, within HP15_3899 at 4130.183 kb on + strand, within HP15_3899 at 4130.188 kb on + strand, within HP15_3899 at 4130.191 kb on - strand, within HP15_3899 at 4130.191 kb on - strand, within HP15_3899 at 4130.212 kb on + strand, within HP15_3899 at 4130.221 kb on + strand, within HP15_3899 at 4130.292 kb on - strand, within HP15_3899 at 4130.376 kb on - strand at 4130.397 kb on - strand at 4130.619 kb on + strand, within HP15_3900 at 4130.650 kb on - strand, within HP15_3900 at 4130.668 kb on + strand, within HP15_3900 at 4130.668 kb on + strand, within HP15_3900 at 4130.676 kb on - strand, within HP15_3900 at 4130.700 kb on - strand, within HP15_3900 at 4130.794 kb on - strand, within HP15_3900 at 4130.979 kb on - strand, within HP15_3900 at 4130.989 kb on - strand, within HP15_3900 at 4130.998 kb on - strand, within HP15_3900 at 4131.110 kb on + strand at 4131.120 kb on + strand at 4131.120 kb on + strand at 4131.143 kb on - strand at 4131.176 kb on + strand at 4131.191 kb on + strand at 4131.196 kb on + strand at 4131.214 kb on + strand at 4131.222 kb on - strand at 4131.222 kb on - strand at 4131.328 kb on + strand, within HP15_3901 at 4131.395 kb on + strand, within HP15_3901
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 4,128,842 + HP15_3898 0.43 -0.7 4,128,860 - HP15_3898 0.44 -0.7 4,128,911 + HP15_3898 0.47 -0.5 4,128,924 - HP15_3898 0.48 -0.1 4,128,975 + HP15_3898 0.52 -1.5 4,128,981 + HP15_3898 0.52 +0.7 4,128,987 + HP15_3898 0.53 +0.2 4,128,987 + HP15_3898 0.53 -1.8 4,129,096 + HP15_3898 0.60 +0.5 4,129,240 + HP15_3898 0.70 +0.9 4,129,250 - HP15_3898 0.70 -0.5 4,129,256 + HP15_3898 0.71 -1.7 4,129,264 + HP15_3898 0.71 -0.0 4,129,345 + HP15_3898 0.77 +0.4 4,129,546 - -0.2 4,129,594 - -0.2 4,129,640 + -0.5 4,129,661 - -0.6 4,129,750 - +0.1 4,129,841 + +0.1 4,129,926 - HP15_3899 0.15 +0.2 4,129,954 + HP15_3899 0.20 +0.3 4,129,962 - HP15_3899 0.22 +2.0 4,130,070 + HP15_3899 0.41 +0.4 4,130,075 + HP15_3899 0.42 +0.9 4,130,183 + HP15_3899 0.61 -0.5 4,130,188 + HP15_3899 0.62 +0.2 4,130,191 - HP15_3899 0.62 -0.5 4,130,191 - HP15_3899 0.62 +0.7 4,130,212 + HP15_3899 0.66 -0.0 4,130,221 + HP15_3899 0.68 +3.4 4,130,292 - HP15_3899 0.80 +0.2 4,130,376 - -0.7 4,130,397 - -0.2 4,130,619 + HP15_3900 0.31 -0.1 4,130,650 - HP15_3900 0.36 -0.9 4,130,668 + HP15_3900 0.38 -0.8 4,130,668 + HP15_3900 0.38 -0.2 4,130,676 - HP15_3900 0.39 -0.8 4,130,700 - HP15_3900 0.43 +0.2 4,130,794 - HP15_3900 0.56 +0.3 4,130,979 - HP15_3900 0.83 -0.3 4,130,989 - HP15_3900 0.84 -0.3 4,130,998 - HP15_3900 0.85 +0.5 4,131,110 + -0.0 4,131,120 + -0.9 4,131,120 + -0.5 4,131,143 - +5.6 4,131,176 + -1.0 4,131,191 + +0.4 4,131,196 + +0.4 4,131,214 + -0.6 4,131,222 - -1.5 4,131,222 - -0.1 4,131,328 + HP15_3901 0.15 +0.1 4,131,395 + HP15_3901 0.20 +1.2
Or see this region's nucleotide sequence