Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3862 and HP15_3863 are separated by 159 nucleotides HP15_3863 and HP15_3864 are separated by 79 nucleotides
HP15_3862: HP15_3862 - pyridoxamine 5'-phosphate oxidase, at 4,087,101 to 4,087,811
_3862
HP15_3863: HP15_3863 - GGDEF domain protein, at 4,087,971 to 4,089,257
_3863
HP15_3864: HP15_3864 - secreted protein containing DUF748, at 4,089,337 to 4,092,162
_3864
Position (kb)
4087
4088
4089
4090 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4087.752 kb on - strand at 4087.752 kb on - strand at 4087.766 kb on + strand at 4087.886 kb on + strand at 4087.976 kb on - strand at 4087.981 kb on + strand at 4087.999 kb on - strand at 4088.122 kb on + strand, within HP15_3863 at 4088.130 kb on - strand, within HP15_3863 at 4088.198 kb on - strand, within HP15_3863 at 4088.225 kb on + strand, within HP15_3863 at 4088.247 kb on - strand, within HP15_3863 at 4088.247 kb on - strand, within HP15_3863 at 4088.252 kb on - strand, within HP15_3863 at 4088.285 kb on + strand, within HP15_3863 at 4088.293 kb on + strand, within HP15_3863 at 4088.301 kb on - strand, within HP15_3863 at 4088.303 kb on + strand, within HP15_3863 at 4088.325 kb on + strand, within HP15_3863 at 4088.359 kb on + strand, within HP15_3863 at 4088.428 kb on - strand, within HP15_3863 at 4088.483 kb on + strand, within HP15_3863 at 4088.487 kb on + strand, within HP15_3863 at 4088.625 kb on - strand, within HP15_3863 at 4088.918 kb on + strand, within HP15_3863 at 4089.066 kb on - strand, within HP15_3863 at 4089.066 kb on - strand, within HP15_3863 at 4089.076 kb on - strand, within HP15_3863 at 4089.149 kb on + strand at 4089.273 kb on - strand at 4089.346 kb on + strand at 4089.354 kb on - strand at 4089.421 kb on - strand at 4089.421 kb on - strand at 4089.467 kb on - strand at 4089.467 kb on - strand at 4089.491 kb on - strand at 4089.547 kb on + strand at 4089.651 kb on - strand, within HP15_3864 at 4089.902 kb on + strand, within HP15_3864 at 4089.902 kb on + strand, within HP15_3864 at 4089.902 kb on + strand, within HP15_3864 at 4089.902 kb on + strand, within HP15_3864 at 4089.910 kb on - strand, within HP15_3864 at 4089.910 kb on - strand, within HP15_3864 at 4089.910 kb on - strand, within HP15_3864 at 4089.910 kb on - strand, within HP15_3864 at 4089.910 kb on - strand, within HP15_3864 at 4089.910 kb on - strand, within HP15_3864 at 4089.940 kb on + strand, within HP15_3864 at 4090.061 kb on + strand, within HP15_3864 at 4090.069 kb on - strand, within HP15_3864 at 4090.118 kb on + strand, within HP15_3864 at 4090.131 kb on - strand, within HP15_3864
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 4,087,752 - +0.0 4,087,752 - -0.2 4,087,766 + -0.8 4,087,886 + -0.2 4,087,976 - +0.2 4,087,981 + +0.5 4,087,999 - +0.0 4,088,122 + HP15_3863 0.12 +0.6 4,088,130 - HP15_3863 0.12 +0.3 4,088,198 - HP15_3863 0.18 +0.4 4,088,225 + HP15_3863 0.20 +0.2 4,088,247 - HP15_3863 0.21 +3.0 4,088,247 - HP15_3863 0.21 +0.3 4,088,252 - HP15_3863 0.22 +1.4 4,088,285 + HP15_3863 0.24 -1.2 4,088,293 + HP15_3863 0.25 +0.1 4,088,301 - HP15_3863 0.26 +0.2 4,088,303 + HP15_3863 0.26 +0.4 4,088,325 + HP15_3863 0.28 -0.1 4,088,359 + HP15_3863 0.30 -0.0 4,088,428 - HP15_3863 0.36 +0.1 4,088,483 + HP15_3863 0.40 +0.4 4,088,487 + HP15_3863 0.40 -0.0 4,088,625 - HP15_3863 0.51 +2.0 4,088,918 + HP15_3863 0.74 +1.0 4,089,066 - HP15_3863 0.85 +0.0 4,089,066 - HP15_3863 0.85 +0.2 4,089,076 - HP15_3863 0.86 -0.7 4,089,149 + +0.1 4,089,273 - +1.5 4,089,346 + -0.0 4,089,354 - -0.2 4,089,421 - -0.0 4,089,421 - -0.1 4,089,467 - -0.6 4,089,467 - +1.2 4,089,491 - +0.6 4,089,547 + -1.0 4,089,651 - HP15_3864 0.11 -0.6 4,089,902 + HP15_3864 0.20 +0.6 4,089,902 + HP15_3864 0.20 -0.7 4,089,902 + HP15_3864 0.20 +0.4 4,089,902 + HP15_3864 0.20 -0.3 4,089,910 - HP15_3864 0.20 +0.3 4,089,910 - HP15_3864 0.20 -0.3 4,089,910 - HP15_3864 0.20 +0.2 4,089,910 - HP15_3864 0.20 +0.0 4,089,910 - HP15_3864 0.20 -0.3 4,089,910 - HP15_3864 0.20 +0.2 4,089,940 + HP15_3864 0.21 +0.2 4,090,061 + HP15_3864 0.26 +0.4 4,090,069 - HP15_3864 0.26 +0.8 4,090,118 + HP15_3864 0.28 +1.8 4,090,131 - HP15_3864 0.28 -0.2
Or see this region's nucleotide sequence