Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02220 and PGA1_262p02230 are separated by 94 nucleotides PGA1_262p02230 and PGA1_262p02240 overlap by 4 nucleotides PGA1_262p02240 and PGA1_262p02250 overlap by 1 nucleotides
PGA1_262p02220: PGA1_262p02220 - ABC transporter, periplasmic solute-binding protein, at 239,789 to 240,859
_262p02220
PGA1_262p02230: PGA1_262p02230 - zinc uptake regulation protein zur-like protein, at 240,954 to 241,436
_262p02230
PGA1_262p02240: PGA1_262p02240 - zinc import ATP-binding protein ZnuC, at 241,433 to 242,209
_262p02240
PGA1_262p02250: PGA1_262p02250 - high-affinity zinc uptake system membrane protein ZnuB, at 242,209 to 243,006
_262p02250
Position (kb) 240
241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 240.890 kb on - strand at 240.953 kb on + strand at 240.961 kb on - strand at 241.231 kb on + strand, within PGA1_262p02230 at 241.345 kb on - strand, within PGA1_262p02230 at 241.439 kb on - strand at 242.107 kb on - strand, within PGA1_262p02240 at 242.150 kb on + strand at 242.150 kb on + strand at 242.150 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 240,890 - -0.0 240,953 + +0.5 240,961 - +0.9 241,231 + PGA1_262p02230 0.57 +0.8 241,345 - PGA1_262p02230 0.81 -0.0 241,439 - -1.1 242,107 - PGA1_262p02240 0.87 +0.8 242,150 + +0.0 242,150 + +0.5 242,150 + -3.1
Or see this region's nucleotide sequence