Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_37 and HP15_38 are separated by 26 nucleotides HP15_38 and HP15_39 are separated by 235 nucleotides
HP15_37: HP15_37 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 41,347 to 42,048
_37
HP15_38: HP15_38 - fumarylacetoacetate (FAA) hydrolase, at 42,075 to 43,064
_38
HP15_39: HP15_39 - ring hydroxylating dioxygenase, alpha subunit, at 43,300 to 44,616
_39
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 41.084 kb on + strand at 41.115 kb on - strand at 41.322 kb on + strand at 41.535 kb on - strand, within HP15_37 at 41.551 kb on + strand, within HP15_37 at 41.626 kb on - strand, within HP15_37 at 41.645 kb on - strand, within HP15_37 at 41.712 kb on + strand, within HP15_37 at 41.752 kb on - strand, within HP15_37 at 41.779 kb on + strand, within HP15_37 at 41.779 kb on + strand, within HP15_37 at 41.811 kb on + strand, within HP15_37 at 41.928 kb on - strand, within HP15_37 at 41.938 kb on - strand, within HP15_37 at 42.021 kb on + strand at 42.043 kb on + strand at 42.051 kb on - strand at 42.088 kb on + strand at 42.131 kb on - strand at 42.149 kb on + strand at 42.156 kb on - strand at 42.164 kb on + strand at 42.164 kb on + strand at 42.230 kb on + strand, within HP15_38 at 42.230 kb on + strand, within HP15_38 at 42.238 kb on - strand, within HP15_38 at 42.314 kb on - strand, within HP15_38 at 42.375 kb on + strand, within HP15_38 at 42.403 kb on + strand, within HP15_38 at 42.415 kb on + strand, within HP15_38 at 42.426 kb on - strand, within HP15_38 at 42.688 kb on + strand, within HP15_38 at 42.749 kb on - strand, within HP15_38 at 42.769 kb on + strand, within HP15_38 at 42.840 kb on + strand, within HP15_38 at 42.887 kb on + strand, within HP15_38 at 42.915 kb on + strand, within HP15_38 at 42.915 kb on + strand, within HP15_38 at 42.923 kb on - strand, within HP15_38 at 42.949 kb on + strand, within HP15_38 at 42.957 kb on - strand, within HP15_38 at 43.025 kb on - strand at 43.100 kb on + strand at 43.108 kb on - strand at 43.127 kb on - strand at 43.150 kb on + strand at 43.158 kb on - strand at 43.158 kb on - strand at 43.182 kb on - strand at 43.187 kb on + strand at 43.195 kb on - strand at 43.202 kb on - strand at 43.253 kb on + strand at 43.261 kb on + strand at 43.261 kb on - strand at 43.267 kb on + strand at 43.272 kb on + strand at 43.272 kb on + strand at 43.280 kb on - strand at 43.294 kb on + strand at 43.302 kb on - strand at 43.414 kb on - strand at 43.434 kb on - strand, within HP15_39 at 43.434 kb on - strand, within HP15_39 at 43.434 kb on - strand, within HP15_39 at 43.485 kb on - strand, within HP15_39 at 43.595 kb on - strand, within HP15_39 at 43.595 kb on - strand, within HP15_39 at 43.633 kb on - strand, within HP15_39 at 43.677 kb on + strand, within HP15_39 at 43.683 kb on - strand, within HP15_39 at 43.683 kb on - strand, within HP15_39 at 43.692 kb on - strand, within HP15_39 at 43.940 kb on - strand, within HP15_39 at 43.941 kb on - strand, within HP15_39 at 43.946 kb on + strand, within HP15_39 at 43.951 kb on + strand, within HP15_39 at 43.951 kb on + strand, within HP15_39 at 43.951 kb on + strand, within HP15_39 at 43.954 kb on - strand, within HP15_39 at 43.959 kb on - strand, within HP15_39 at 43.959 kb on - strand, within HP15_39 at 43.959 kb on - strand, within HP15_39 at 43.959 kb on - strand, within HP15_39 at 43.973 kb on + strand, within HP15_39 at 43.973 kb on + strand, within HP15_39 at 43.990 kb on + strand, within HP15_39 at 43.990 kb on + strand, within HP15_39 at 43.990 kb on + strand, within HP15_39 at 43.998 kb on - strand, within HP15_39 at 43.998 kb on - strand, within HP15_39 at 43.998 kb on - strand, within HP15_39 at 44.007 kb on + strand, within HP15_39 at 44.012 kb on + strand, within HP15_39
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 41,084 + +0.2 41,115 - +0.8 41,322 + -0.1 41,535 - HP15_37 0.27 -1.3 41,551 + HP15_37 0.29 -0.4 41,626 - HP15_37 0.40 -0.7 41,645 - HP15_37 0.42 +1.7 41,712 + HP15_37 0.52 +0.2 41,752 - HP15_37 0.58 +0.1 41,779 + HP15_37 0.62 +1.0 41,779 + HP15_37 0.62 +0.1 41,811 + HP15_37 0.66 +0.7 41,928 - HP15_37 0.83 -0.4 41,938 - HP15_37 0.84 -1.7 42,021 + +0.2 42,043 + -0.7 42,051 - +0.5 42,088 + +0.6 42,131 - +1.5 42,149 + +0.1 42,156 - -2.4 42,164 + -0.3 42,164 + +0.1 42,230 + HP15_38 0.16 +0.4 42,230 + HP15_38 0.16 -0.6 42,238 - HP15_38 0.16 +0.8 42,314 - HP15_38 0.24 -1.1 42,375 + HP15_38 0.30 +1.2 42,403 + HP15_38 0.33 +0.1 42,415 + HP15_38 0.34 +0.7 42,426 - HP15_38 0.35 +0.5 42,688 + HP15_38 0.62 +0.3 42,749 - HP15_38 0.68 +0.1 42,769 + HP15_38 0.70 -0.1 42,840 + HP15_38 0.77 +2.5 42,887 + HP15_38 0.82 +0.2 42,915 + HP15_38 0.85 +0.6 42,915 + HP15_38 0.85 +1.0 42,923 - HP15_38 0.86 +0.7 42,949 + HP15_38 0.88 -0.0 42,957 - HP15_38 0.89 +1.1 43,025 - -0.8 43,100 + +0.1 43,108 - -0.3 43,127 - +0.3 43,150 + +0.0 43,158 - +5.2 43,158 - -0.1 43,182 - -0.6 43,187 + -1.1 43,195 - -0.3 43,202 - +0.3 43,253 + -0.3 43,261 + -1.1 43,261 - -0.4 43,267 + +0.1 43,272 + +0.2 43,272 + -0.9 43,280 - +0.5 43,294 + +0.2 43,302 - -1.1 43,414 - -0.8 43,434 - HP15_39 0.10 +0.0 43,434 - HP15_39 0.10 +0.4 43,434 - HP15_39 0.10 -0.6 43,485 - HP15_39 0.14 -0.4 43,595 - HP15_39 0.22 -0.1 43,595 - HP15_39 0.22 -0.6 43,633 - HP15_39 0.25 +0.4 43,677 + HP15_39 0.29 +2.4 43,683 - HP15_39 0.29 +0.5 43,683 - HP15_39 0.29 -0.9 43,692 - HP15_39 0.30 -1.1 43,940 - HP15_39 0.49 -0.2 43,941 - HP15_39 0.49 +2.0 43,946 + HP15_39 0.49 -0.1 43,951 + HP15_39 0.49 +0.6 43,951 + HP15_39 0.49 +0.0 43,951 + HP15_39 0.49 +0.5 43,954 - HP15_39 0.50 -0.2 43,959 - HP15_39 0.50 -0.1 43,959 - HP15_39 0.50 -1.5 43,959 - HP15_39 0.50 +1.0 43,959 - HP15_39 0.50 -0.1 43,973 + HP15_39 0.51 -0.8 43,973 + HP15_39 0.51 -0.1 43,990 + HP15_39 0.52 -0.2 43,990 + HP15_39 0.52 -0.1 43,990 + HP15_39 0.52 -0.4 43,998 - HP15_39 0.53 +0.3 43,998 - HP15_39 0.53 +0.9 43,998 - HP15_39 0.53 -1.7 44,007 + HP15_39 0.54 -0.6 44,012 + HP15_39 0.54 -0.8
Or see this region's nucleotide sequence