Strain Fitness in Marinobacter adhaerens HP15 around HP15_3718

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3715 and HP15_3716 are separated by 18 nucleotidesHP15_3716 and HP15_3717 are separated by 77 nucleotidesHP15_3717 and HP15_3718 are separated by 83 nucleotidesHP15_3718 and HP15_3719 are separated by 5 nucleotidesHP15_3719 and HP15_3720 are separated by 105 nucleotides HP15_3715: HP15_3715 - short-chain dehydrogenase/reductase SDR, at 3,931,016 to 3,931,801 _3715 HP15_3716: HP15_3716 - conserved hypothetical protein, at 3,931,820 to 3,932,110 _3716 HP15_3717: HP15_3717 - conserved hypothetical protein, at 3,932,188 to 3,932,619 _3717 HP15_3718: HP15_3718 - conserved hypothetical protein, secreted, at 3,932,703 to 3,933,143 _3718 HP15_3719: HP15_3719 - short-chain dehydrogenase/reductase SDR, at 3,933,149 to 3,933,856 _3719 HP15_3720: HP15_3720 - DNA damage response nuclease (from data), at 3,933,962 to 3,935,671 _3720 Position (kb) 3932 3933 3934Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3931.748 kb on + strandat 3931.809 kb on - strandat 3931.878 kb on + strand, within HP15_3716at 3931.886 kb on - strand, within HP15_3716at 3931.989 kb on + strand, within HP15_3716at 3932.030 kb on - strand, within HP15_3716at 3932.134 kb on - strandat 3932.193 kb on - strandat 3932.195 kb on + strandat 3932.195 kb on + strandat 3932.212 kb on + strandat 3932.241 kb on - strand, within HP15_3717at 3932.345 kb on - strand, within HP15_3717at 3932.378 kb on + strand, within HP15_3717at 3932.427 kb on + strand, within HP15_3717at 3932.521 kb on + strand, within HP15_3717at 3932.524 kb on - strand, within HP15_3717at 3932.529 kb on - strand, within HP15_3717at 3932.572 kb on - strand, within HP15_3717at 3932.652 kb on + strandat 3932.652 kb on + strandat 3932.660 kb on - strandat 3932.660 kb on - strandat 3932.660 kb on - strandat 3932.687 kb on + strandat 3932.772 kb on + strand, within HP15_3718at 3932.824 kb on + strand, within HP15_3718at 3932.824 kb on + strand, within HP15_3718at 3932.832 kb on - strand, within HP15_3718at 3932.832 kb on - strand, within HP15_3718at 3932.868 kb on + strand, within HP15_3718at 3932.868 kb on + strand, within HP15_3718at 3932.873 kb on + strand, within HP15_3718at 3932.873 kb on + strand, within HP15_3718at 3932.876 kb on - strand, within HP15_3718at 3932.881 kb on - strand, within HP15_3718at 3932.881 kb on - strand, within HP15_3718at 3932.897 kb on - strand, within HP15_3718at 3932.919 kb on + strand, within HP15_3718at 3932.927 kb on - strand, within HP15_3718at 3932.963 kb on + strand, within HP15_3718at 3932.983 kb on + strand, within HP15_3718at 3933.016 kb on + strand, within HP15_3718at 3933.083 kb on + strand, within HP15_3718at 3933.390 kb on - strand, within HP15_3719at 3933.391 kb on - strand, within HP15_3719at 3933.392 kb on + strand, within HP15_3719at 3933.397 kb on + strand, within HP15_3719at 3933.445 kb on - strand, within HP15_3719at 3933.466 kb on + strand, within HP15_3719at 3933.488 kb on + strand, within HP15_3719at 3933.712 kb on - strand, within HP15_3719at 3933.774 kb on + strand, within HP15_3719at 3933.785 kb on + strand, within HP15_3719at 3933.789 kb on + strandat 3933.797 kb on - strandat 3933.806 kb on + strandat 3933.814 kb on - strandat 3933.873 kb on - strandat 3933.966 kb on - strandat 3933.979 kb on + strandat 3933.991 kb on + strandat 3933.992 kb on - strandat 3933.997 kb on - strandat 3933.997 kb on - strandat 3934.058 kb on + strandat 3934.058 kb on + strandat 3934.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,931,748 + +0.4
3,931,809 - +0.2
3,931,878 + HP15_3716 0.20 +0.2
3,931,886 - HP15_3716 0.23 -0.4
3,931,989 + HP15_3716 0.58 -1.0
3,932,030 - HP15_3716 0.72 -0.2
3,932,134 - +0.7
3,932,193 - +0.6
3,932,195 + +0.7
3,932,195 + +1.3
3,932,212 + +0.2
3,932,241 - HP15_3717 0.12 -3.5
3,932,345 - HP15_3717 0.36 -0.0
3,932,378 + HP15_3717 0.44 +1.8
3,932,427 + HP15_3717 0.55 +0.6
3,932,521 + HP15_3717 0.77 +1.0
3,932,524 - HP15_3717 0.78 -0.7
3,932,529 - HP15_3717 0.79 +1.2
3,932,572 - HP15_3717 0.89 +0.4
3,932,652 + +1.9
3,932,652 + -0.1
3,932,660 - +0.0
3,932,660 - -0.5
3,932,660 - +0.1
3,932,687 + +1.6
3,932,772 + HP15_3718 0.16 -0.2
3,932,824 + HP15_3718 0.27 -0.1
3,932,824 + HP15_3718 0.27 +1.4
3,932,832 - HP15_3718 0.29 +0.4
3,932,832 - HP15_3718 0.29 -0.4
3,932,868 + HP15_3718 0.37 -0.7
3,932,868 + HP15_3718 0.37 +3.2
3,932,873 + HP15_3718 0.39 +0.2
3,932,873 + HP15_3718 0.39 +0.2
3,932,876 - HP15_3718 0.39 +4.2
3,932,881 - HP15_3718 0.40 +0.1
3,932,881 - HP15_3718 0.40 +3.0
3,932,897 - HP15_3718 0.44 +1.1
3,932,919 + HP15_3718 0.49 -0.3
3,932,927 - HP15_3718 0.51 -0.5
3,932,963 + HP15_3718 0.59 -0.4
3,932,983 + HP15_3718 0.63 -1.4
3,933,016 + HP15_3718 0.71 -0.4
3,933,083 + HP15_3718 0.86 -1.9
3,933,390 - HP15_3719 0.34 +0.8
3,933,391 - HP15_3719 0.34 +0.8
3,933,392 + HP15_3719 0.34 +0.3
3,933,397 + HP15_3719 0.35 +0.6
3,933,445 - HP15_3719 0.42 -0.8
3,933,466 + HP15_3719 0.45 -0.0
3,933,488 + HP15_3719 0.48 -0.0
3,933,712 - HP15_3719 0.80 +0.6
3,933,774 + HP15_3719 0.88 -0.2
3,933,785 + HP15_3719 0.90 +0.0
3,933,789 + -0.3
3,933,797 - -0.4
3,933,806 + -0.7
3,933,814 - -0.5
3,933,873 - -0.5
3,933,966 - -3.0
3,933,979 + -0.2
3,933,991 + +0.4
3,933,992 - -0.5
3,933,997 - +0.4
3,933,997 - +0.8
3,934,058 + -0.7
3,934,058 + -1.9
3,934,066 - -0.7

Or see this region's nucleotide sequence